Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   J3Q17_RS05385 Genome accession   NZ_CP071576
Coordinates   1049710..1050261 (+) Length   183 a.a.
NCBI ID   WP_002856575.1    Uniprot ID   -
Organism   Campylobacter jejuni strain R12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1044710..1055261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3Q17_RS05350 (J3Q17_05350) - 1044900..1045325 (+) 426 WP_002856557.1 GNAT family N-acetyltransferase -
  J3Q17_RS05355 (J3Q17_05355) - 1045389..1046009 (+) 621 WP_002856358.1 NAD(P)H-dependent oxidoreductase -
  J3Q17_RS05360 (J3Q17_05360) - 1046009..1046614 (+) 606 WP_002853752.1 NAD(P)H-dependent oxidoreductase -
  J3Q17_RS05365 (J3Q17_05365) pgsA 1046739..1047275 (+) 537 WP_002812871.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  J3Q17_RS05370 (J3Q17_05370) rseP 1047272..1048378 (+) 1107 WP_002812870.1 RIP metalloprotease RseP -
  J3Q17_RS05375 (J3Q17_05375) - 1048371..1049237 (+) 867 WP_002812869.1 VirK family antimicrobial peptide resistance protein -
  J3Q17_RS05380 (J3Q17_05380) rpsF 1049324..1049701 (+) 378 WP_002812868.1 30S ribosomal protein S6 -
  J3Q17_RS05385 (J3Q17_05385) ssb 1049710..1050261 (+) 552 WP_002856575.1 single-stranded DNA-binding protein Machinery gene
  J3Q17_RS05390 (J3Q17_05390) rpsR 1050272..1050532 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  J3Q17_RS05395 (J3Q17_05395) lon 1050593..1052968 (-) 2376 WP_002856101.1 endopeptidase La -
  J3Q17_RS05400 (J3Q17_05400) - 1052985..1053632 (-) 648 WP_002852961.1 outer membrane protein assembly factor BamD -
  J3Q17_RS05405 (J3Q17_05405) fliW 1053793..1054182 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  J3Q17_RS05410 (J3Q17_05410) proC 1054182..1054913 (+) 732 WP_002855729.1 pyrroline-5-carboxylate reductase Machinery gene
  J3Q17_RS05415 (J3Q17_05415) ctsT 1054910..1055212 (+) 303 WP_002855822.1 transformation system protein Machinery gene

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20800.68 Da        Isoelectric Point: 5.0431

>NTDB_id=477693 J3Q17_RS05385 WP_002856575.1 1049710..1050261(+) (ssb) [Campylobacter jejuni strain R12]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTTNGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKTNPTPQRNQNP
QHEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=477693 J3Q17_RS05385 WP_002856575.1 1049710..1050261(+) (ssb) [Campylobacter jejuni strain R12]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCACAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTAAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGAAATTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAA
GCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAACAAACCCTACTCCACAAAGAAACCAAAACCCA
CAACACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.418

96.721

0.372