Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   J3Q17_RS03285 Genome accession   NZ_CP071576
Coordinates   631110..631493 (+) Length   127 a.a.
NCBI ID   WP_002856861.1    Uniprot ID   -
Organism   Campylobacter jejuni strain R12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 626110..636493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3Q17_RS03265 (J3Q17_03265) - 626189..628123 (-) 1935 WP_207498355.1 ribonuclease R family protein -
  J3Q17_RS03270 (J3Q17_03270) ilvC 628242..629264 (+) 1023 WP_002857064.1 ketol-acid reductoisomerase -
  J3Q17_RS03275 (J3Q17_03275) - 629268..630350 (+) 1083 WP_002869356.1 divergent polysaccharide deacetylase family protein -
  J3Q17_RS03280 (J3Q17_03280) dprA 630340..631113 (+) 774 WP_002857196.1 DNA-processing protein DprA Machinery gene
  J3Q17_RS03285 (J3Q17_03285) dprB 631110..631493 (+) 384 WP_002856861.1 Holliday junction resolvase RuvX Machinery gene
  J3Q17_RS03290 (J3Q17_03290) - 631522..632361 (+) 840 WP_011812724.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  J3Q17_RS03295 (J3Q17_03295) msrA 632537..633034 (-) 498 WP_002855174.1 peptide-methionine (S)-S-oxide reductase MsrA -
  J3Q17_RS03300 (J3Q17_03300) ppa 633075..633593 (-) 519 WP_002855031.1 inorganic diphosphatase -
  J3Q17_RS03305 (J3Q17_03305) adk 633603..634181 (-) 579 WP_002855137.1 adenylate kinase -
  J3Q17_RS03310 (J3Q17_03310) aspS 634178..635929 (-) 1752 WP_002854803.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14074.57 Da        Isoelectric Point: 9.5433

>NTDB_id=477686 J3Q17_RS03285 WP_002856861.1 631110..631493(+) (dprB) [Campylobacter jejuni strain R12]
MRALALDVGLKRIGVALCVDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=477686 J3Q17_RS03285 WP_002856861.1 631110..631493(+) (dprB) [Campylobacter jejuni strain R12]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCGTAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCTGCCAATGAAATCAAAAATTTACTTAAAATACATGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGCGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTATCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGTGGAACAAGTAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449