Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   J3Q16_RS05840 Genome accession   NZ_CP071575
Coordinates   1144052..1144918 (-) Length   288 a.a.
NCBI ID   WP_002856218.1    Uniprot ID   -
Organism   Campylobacter jejuni strain RM3147     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1139052..1149918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3Q16_RS05820 (J3Q16_05820) metF 1140905..1141753 (+) 849 WP_002856017.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  J3Q16_RS05825 (J3Q16_05825) - 1141775..1141966 (-) 192 WP_002852856.1 membrane protein -
  J3Q16_RS05830 (J3Q16_05830) atpB 1141963..1142643 (-) 681 WP_002852750.1 F0F1 ATP synthase subunit A -
  J3Q16_RS05835 (J3Q16_05835) radA/sms 1142712..1144052 (-) 1341 WP_002856363.1 DNA repair protein RadA Machinery gene
  J3Q16_RS05840 (J3Q16_05840) pilA 1144052..1144918 (-) 867 WP_002856218.1 signal recognition particle-docking protein FtsY Machinery gene
  J3Q16_RS05845 (J3Q16_05845) - 1144918..1145475 (-) 558 WP_002855869.1 TlpA disulfide reductase family protein -
  J3Q16_RS05850 (J3Q16_05850) - 1145558..1146184 (+) 627 WP_052805404.1 5-formyltetrahydrofolate cyclo-ligase -
  J3Q16_RS05855 (J3Q16_05855) rny 1146105..1147658 (+) 1554 WP_052805405.1 ribonuclease Y -
  J3Q16_RS05860 (J3Q16_05860) - 1147667..1148224 (+) 558 WP_002856055.1 DedA family protein -
  J3Q16_RS05865 (J3Q16_05865) - 1148224..1149483 (+) 1260 WP_002910956.1 ComEC/Rec2 family competence protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 32049.03 Da        Isoelectric Point: 5.5179

>NTDB_id=477654 J3Q16_RS05840 WP_002856218.1 1144052..1144918(-) (pilA) [Campylobacter jejuni strain RM3147]
MFNFFKKGLAKTLENIVGVKGENKKITKDLLEEILLEADVSYEIVEEIIYYLPPQNEVKKEDLKRVMGSYFLYEKKETNQ
EKPFVELILGVNGAGKTTSIAKLAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVDIVLTAQGHDPSAVAFDTISK
AKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEGAPHRKILVLDGTQGNAGILQAKAFNELVKLDGVIITKLDG
TAKGGALFSIARELELPIFYVGVGEQMTDLQEFNANAYLDTLLDPIFE

Nucleotide


Download         Length: 867 bp        

>NTDB_id=477654 J3Q16_RS05840 WP_002856218.1 1144052..1144918(-) (pilA) [Campylobacter jejuni strain RM3147]
ATGTTTAATTTTTTTAAAAAAGGACTTGCAAAAACTCTTGAAAATATTGTTGGAGTTAAAGGAGAGAATAAAAAGATAAC
CAAAGATTTGCTTGAAGAAATTTTGCTTGAAGCAGATGTAAGTTATGAAATAGTTGAAGAGATAATTTATTATTTACCAC
CTCAAAATGAAGTAAAAAAAGAAGATTTAAAGCGTGTTATGGGTTCTTATTTTCTTTATGAAAAAAAAGAAACCAATCAA
GAAAAACCTTTTGTAGAGCTTATTTTAGGAGTAAATGGAGCAGGAAAAACAACAAGTATTGCCAAGCTTGCTTATTTATA
CAAAAACCAAAATCAAAAAGTGATTTTAGGAGCGTGTGATACTTTTAGAGCAGGTGCGATTGAGCAATTAAAACTTTGGG
CGCAAAAAGTGGATGTAGATATAGTTTTAACTGCACAAGGGCATGATCCTTCAGCGGTTGCTTTTGATACCATTTCTAAA
GCAAAAGCAAAGGATTTTGATAGAGTTATTATCGATACAGCAGGGCGTTTGCAAAATCAAAAAAATTTAGCTCATGAGCT
TGAAAAAATTGTAAGAATTTCAAACAAAGCTTTAGAAGGCGCACCCCATAGAAAAATTTTAGTTTTAGATGGAACACAGG
GAAATGCTGGAATTTTACAAGCTAAAGCTTTTAATGAGCTTGTAAAACTTGATGGTGTGATTATCACAAAGCTTGATGGG
ACAGCTAAAGGGGGTGCACTTTTTAGTATAGCAAGAGAGCTTGAGCTTCCTATTTTTTATGTAGGCGTGGGTGAGCAAAT
GACGGATTTGCAAGAATTTAATGCAAATGCTTACTTAGATACTTTATTAGATCCTATTTTTGAATAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(84-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

41.584

100

0.437