Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   H9Q86_RS04900 Genome accession   NZ_CP060670
Coordinates   1049818..1050423 (+) Length   201 a.a.
NCBI ID   WP_066038538.1    Uniprot ID   A0A5V6CZ31
Organism   Salmonella enterica strain 190807_1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1044818..1055423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9Q86_RS04880 - 1045213..1046973 (-) 1761 WP_000156448.1 AAA family ATPase -
  H9Q86_RS04885 matP 1047159..1047611 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  H9Q86_RS04890 ompA 1047683..1048735 (-) 1053 WP_001674965.1 porin OmpA -
  H9Q86_RS04895 sulA 1049092..1049601 (-) 510 WP_000288733.1 SOS-induced cell division inhibitor SulA -
  H9Q86_RS04900 sxy/tfoX 1049818..1050423 (+) 606 WP_066038538.1 TfoX/Sxy family DNA transformation protein Regulator
  H9Q86_RS04905 yccS 1050410..1052563 (-) 2154 WP_000950876.1 YccS family putative transporter -
  H9Q86_RS04910 - 1052582..1053028 (-) 447 WP_001261222.1 YccF domain-containing protein -
  H9Q86_RS04915 helD 1053152..1055206 (+) 2055 WP_000420505.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23208.96 Da        Isoelectric Point: 8.7403

>NTDB_id=477600 H9Q86_RS04900 WP_066038538.1 1049818..1050423(+) (sxy/tfoX) [Salmonella enterica strain 190807_1]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PFLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=477600 H9Q86_RS04900 WP_066038538.1 1049818..1050423(+) (sxy/tfoX) [Salmonella enterica strain 190807_1]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCCCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTTCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTTCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5V6CZ31

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.377

99.005

0.746