Detailed information    

insolico Bioinformatically predicted

Overview

Name   recB   Type   Machinery gene
Locus tag   NMV_RS07985 Genome accession   NC_017501
Coordinates   1560759..1564373 (+) Length   1204 a.a.
NCBI ID   WP_014574120.1    Uniprot ID   A0A9K2PS87
Organism   Neisseria meningitidis 8013     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1555759..1569373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMV_RS07955 (NMV_1606) - 1555786..1557168 (+) 1383 WP_002261755.1 phosphomannomutase/phosphoglucomutase -
  NMV_RS07960 (NMV_1607) - 1557188..1557943 (-) 756 WP_002213983.1 amino acid ABC transporter ATP-binding protein -
  NMV_RS07965 (NMV_1608) - 1557953..1558669 (-) 717 WP_002213985.1 amino acid ABC transporter permease -
  NMV_RS07970 (NMV_1609) - 1558659..1559486 (-) 828 WP_002213986.1 amino acid ABC transporter substrate-binding protein -
  NMV_RS07980 (NMV_1610) - 1559771..1560679 (+) 909 WP_002217584.1 Dyp-type peroxidase -
  NMV_RS07985 (NMV_1611) recB 1560759..1564373 (+) 3615 WP_014574120.1 exodeoxyribonuclease V subunit beta Machinery gene
  NMV_RS07990 (NMV_1612) - 1564412..1564771 (+) 360 WP_002229254.1 rhodanese-like domain-containing protein -
  NMV_RS07995 (NMV_1613) - 1564903..1565382 (+) 480 WP_002226489.1 DUF302 domain-containing protein -
  NMV_RS08000 (NMV_1614) radA 1565654..1567033 (-) 1380 WP_014574121.1 DNA repair protein RadA Machinery gene
  NMV_RS15215 - 1567061..1567231 (+) 171 WP_153308406.1 hypothetical protein -
  NMV_RS08005 (NMV_1615) hemE 1567219..1568283 (-) 1065 WP_002258525.1 uroporphyrinogen decarboxylase -

Sequence

Protein


Download         Length: 1204 a.a.        Molecular weight: 134675.29 Da        Isoelectric Point: 5.8495

>NTDB_id=47748 NMV_RS07985 WP_014574120.1 1560759..1564373(+) (recB) [Neisseria meningitidis 8013]
MSAPIQAFDPLTVPISGTNLIEASAGTGKTYGIAALFTRLIVLEQKNVERVLVVTFTKAATAELKTRLRARLDDVLQVLE
SKEIAKLGDDTLSDGIAAYCAEHHKGDTFLPALLKQALQKEGRTRLIVRLKAAIGQFDNAAIYTIHGFCQRILRDYAFLC
QAPFDVELTEEDGDRLLIPAQDFWRERVSNDPVLAALAFKRKAVPQTVLAQIRAYLSRPYLNFRRPQADLKQAQRNAETS
WQTVCRLLPELEAGFWRIHPDLNGNSYRKNSFGNLFKELAQKSAAGQLPFLDKDTHDRLLKLASDKLEAGLKKGKTPDAA
VFAELQKLADFRRDLDALEEAEEATMIRLQLDLIGYLNRSLAEMKKSRRERGFDDLLLDVHTALTDNPHAETLARAVAEN
WETALIDEFQDTDPLQYEIFQKIFIAQNRPLFLVGDPKQAIYSFRGADIYAYLQAAEDARHRYTLATNYRSHAALIGSIG
ALFRLKERPFVLENIGYSEVGAARAESRLSPKRPAVQVRWLHENDNEKANKDVLRRRAADYCADEIAHALNEAAECRLNF
KGCPLQSGDIAVLVRTHNEAVMVSAALKKRQVQSVLLSRESVFASPEAAALSALIGFWLEPHRAGTLRFVLTSGIFGYDA
QQLHDFNQNESEILHWAESARTALDNWNQYGIFAAMQQFSQTHGIETRLLSRNNGRSLTNYLQLLELLAAEDAQNRNPAA
LHKWLRDQISLAGNNGGDNRAIRLESDEDLVKIVTMHASKGLQYPLVYCPFAWDAQDTGPSDWQILHQSANRTELLAKAQ
LSEDEQKQYADEEMAERLRLLYVALTRAEEQLNIYAAYSSDTADNPLAYLIEGLPQDSRETVRRAYACEKDGIAMLKRNW
RRVADNAPSGTNFAFTEDAPPPAAYRSNAGQTAEFAANSIPERGFRFVRHTSFTALSRHTQTPDGGEEDACPSLDAAETS
VPAMPSETPTASDGISIHDFPKGTQAGLCLHEILEDFKFGQAAAGQETLITDKLKKYGFEEIWLPAVAEMAEACQKTPLT
GAYCLSDIPPECRCPEMGFTLHTEDFGLKRLRDWLTRDDIRLPEVFRAAAETLDFHTVNGFLNGFIDMVCQDPEGNICVI
DYKSNHLGADASAYTRQAMDEAVAHHHYYLQALIYAVAAARYFKLRGQPPAAVSVRYLFLRGLDGKGGGVWRWDIDAAAL
EQIK

Nucleotide


Download         Length: 3615 bp        

>NTDB_id=47748 NMV_RS07985 WP_014574120.1 1560759..1564373(+) (recB) [Neisseria meningitidis 8013]
ATGTCTGCACCCATCCAAGCATTTGACCCGCTGACCGTCCCCATTTCCGGCACCAACCTGATTGAGGCCTCTGCCGGCAC
CGGCAAAACCTACGGCATTGCCGCCCTGTTTACGCGCCTGATCGTATTAGAACAAAAAAACGTCGAACGCGTATTGGTCG
TAACCTTCACCAAAGCCGCCACCGCCGAGTTGAAAACACGCCTGCGCGCACGTTTGGACGATGTGTTGCAGGTTTTAGAA
AGTAAAGAAATTGCCAAACTTGGAGACGACACGCTTTCAGACGGCATCGCCGCCTATTGTGCGGAACACCACAAAGGCGA
CACCTTCCTGCCCGCACTCTTAAAACAGGCTTTGCAAAAAGAGGGCCGGACGCGTCTGATTGTCCGCCTCAAGGCCGCCA
TCGGGCAATTCGACAACGCCGCCATCTATACCATCCACGGCTTCTGCCAACGTATCCTGCGCGACTACGCCTTCTTGTGC
CAAGCACCGTTCGATGTCGAACTGACCGAAGAAGACGGCGACCGCCTGCTTATCCCGGCGCAAGATTTTTGGCGGGAACG
CGTCAGCAATGATCCGGTGCTTGCCGCATTGGCGTTTAAACGCAAAGCTGTGCCGCAAACCGTCCTTGCCCAAATCCGCG
CCTACCTGTCCCGCCCGTACCTGAATTTCCGCCGTCCGCAGGCGGATTTGAAACAGGCGCAGCGCAACGCCGAAACCTCA
TGGCAAACCGTCTGCCGCCTGCTGCCCGAGCTGGAAGCCGGCTTTTGGCGCATCCATCCCGACCTCAACGGCAACAGTTA
CCGCAAAAACAGCTTCGGCAACCTTTTTAAAGAACTGGCACAAAAATCCGCCGCCGGACAACTGCCCTTTCTGGACAAAG
ACACGCACGACAGACTCTTGAAACTTGCGTCCGACAAACTCGAAGCCGGACTGAAAAAAGGCAAAACGCCCGATGCGGCA
GTATTTGCCGAATTGCAGAAACTGGCAGACTTCAGGCGTGATTTGGACGCACTCGAAGAAGCGGAAGAAGCAACAATGAT
CCGGCTGCAACTGGATTTAATCGGATATCTCAACCGCAGCCTTGCCGAGATGAAAAAATCGCGCCGCGAACGAGGTTTCG
ACGACCTGCTTCTCGATGTCCACACCGCGCTGACCGACAATCCGCACGCCGAAACCCTCGCCCGCGCCGTTGCCGAAAAC
TGGGAAACCGCGCTGATCGACGAGTTCCAAGACACCGACCCGCTGCAATACGAAATCTTCCAAAAAATCTTCATCGCCCA
AAACCGCCCGCTGTTTCTGGTCGGCGATCCCAAACAGGCGATTTACAGCTTTCGCGGTGCGGACATTTACGCCTACCTTC
AGGCGGCGGAAGATGCGCGGCACCGCTACACGCTCGCCACCAACTACCGCAGCCACGCCGCGCTTATCGGCAGCATAGGC
GCGCTGTTCCGCCTCAAAGAACGCCCGTTCGTTTTGGAAAACATCGGTTATTCGGAAGTCGGTGCGGCGCGTGCCGAAAG
CAGATTGTCGCCCAAACGTCCTGCCGTACAGGTTCGTTGGCTGCACGAAAACGACAATGAAAAAGCCAACAAAGACGTTT
TGCGCCGCCGTGCCGCCGACTATTGCGCCGACGAAATCGCCCACGCGCTCAACGAAGCCGCCGAATGCCGTCTGAATTTC
AAAGGCTGCCCGTTGCAGTCGGGCGATATTGCCGTGCTGGTACGCACGCACAACGAGGCGGTGATGGTTTCCGCCGCCCT
GAAAAAACGGCAGGTGCAAAGCGTCCTGCTTTCGCGCGAATCCGTGTTCGCCTCGCCCGAAGCCGCCGCCCTGTCCGCAC
TCATCGGCTTCTGGCTCGAACCGCACCGCGCCGGAACGCTGCGCTTTGTCCTAACAAGCGGCATATTCGGTTATGACGCG
CAGCAATTGCACGACTTCAACCAAAACGAAAGCGAGATTTTGCATTGGGCGGAATCTGCCCGAACCGCGCTCGACAACTG
GAATCAATACGGCATTTTCGCCGCCATGCAGCAATTTTCCCAAACACACGGCATCGAAACACGCCTCTTAAGCCGGAACA
ACGGGCGCAGCCTGACCAACTATCTCCAACTGCTCGAACTACTTGCCGCCGAAGACGCGCAAAACCGCAACCCCGCCGCG
CTGCACAAATGGCTGCGCGACCAAATCAGCCTGGCCGGCAACAACGGCGGCGACAACCGCGCCATCCGTCTGGAAAGCGA
CGAAGATTTGGTCAAAATCGTTACCATGCACGCCTCGAAAGGTTTGCAGTATCCGCTGGTGTACTGCCCGTTTGCGTGGG
ACGCGCAAGATACCGGGCCGTCCGACTGGCAAATCCTCCACCAAAGCGCAAACCGAACCGAACTGTTGGCAAAGGCGCAA
CTGTCCGAAGACGAACAGAAACAATACGCCGATGAAGAAATGGCGGAACGCCTGCGCCTGCTTTATGTCGCGCTGACGCG
TGCCGAGGAACAGCTCAACATCTACGCCGCCTATTCTTCCGATACCGCCGACAACCCCCTCGCCTACCTGATCGAAGGCT
TGCCCCAAGACAGCCGCGAAACCGTCCGCCGTGCCTATGCGTGTGAAAAAGACGGCATCGCGATGCTCAAACGCAACTGG
CGGCGCGTGGCGGACAACGCCCCTTCCGGCACAAATTTCGCCTTCACAGAAGATGCGCCGCCCCCTGCCGCCTATCGCAG
CAACGCCGGTCAAACCGCCGAATTTGCCGCAAACAGCATTCCCGAACGCGGATTCCGATTTGTCCGCCACACTAGCTTTA
CCGCCTTAAGCCGCCATACCCAAACGCCCGACGGCGGCGAAGAAGATGCCTGCCCGTCCTTGGATGCCGCCGAAACCTCG
GTGCCGGCGATGCCGTCTGAAACGCCGACGGCTTCAGACGGCATATCGATACACGATTTTCCGAAAGGCACGCAGGCGGG
GCTGTGCCTGCACGAAATTCTTGAAGATTTCAAATTCGGACAAGCAGCCGCCGGACAGGAAACCCTCATCACCGACAAGC
TGAAAAAATACGGATTTGAAGAAATATGGCTGCCTGCCGTTGCCGAAATGGCGGAAGCCTGCCAGAAAACGCCGCTGACG
GGGGCATACTGCCTGTCCGACATCCCGCCCGAGTGCCGCTGTCCCGAAATGGGCTTTACCCTCCACACCGAAGACTTCGG
CCTCAAACGGCTGCGCGACTGGCTTACCCGCGACGACATCAGGCTGCCCGAAGTCTTCCGTGCCGCCGCCGAAACGCTCG
ACTTCCACACCGTCAACGGCTTTTTAAACGGCTTTATCGATATGGTCTGCCAAGACCCCGAGGGAAATATCTGCGTCATC
GACTACAAATCAAACCATCTCGGCGCGGACGCATCCGCCTACACGCGGCAGGCGATGGACGAAGCCGTCGCGCACCACCA
CTATTACCTTCAGGCGCTGATTTACGCCGTTGCCGCCGCACGCTACTTCAAACTGCGCGGACAACCGCCCGCCGCCGTTT
CCGTCCGCTACCTGTTTTTGCGCGGATTGGATGGCAAAGGCGGCGGCGTTTGGCGTTGGGACATAGATGCCGCCGCTTTG
GAACAGATAAAATAA

Domains

Predicted by InterproScan.

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(15-458)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1068-1182)

UvrD-like helicase C-terminal domain (UvrD_C)

(463-835)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria gonorrhoeae strain FA1090

95.017

100

0.95

Multiple sequence alignment