Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   NMV_RS05930 Genome accession   NC_017501
Coordinates   1212028..1213773 (+) Length   581 a.a.
NCBI ID   WP_014574005.1    Uniprot ID   A0A9K2KQE3
Organism   Neisseria meningitidis 8013     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1207028..1218773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMV_RS05905 (NMV_1191) - 1207264..1208802 (+) 1539 WP_014574004.1 SurA N-terminal domain-containing protein -
  NMV_RS05910 (NMV_1193) recR 1208869..1209486 (+) 618 WP_002217147.1 recombination mediator RecR -
  NMV_RS05915 (NMV_1194) - 1209542..1209820 (-) 279 WP_002220967.1 hypothetical protein -
  NMV_RS05920 (NMV_1195) - 1210025..1211272 (+) 1248 WP_002213503.1 lipoprotein-releasing ABC transporter permease subunit -
  NMV_RS05925 (NMV_1196) lolD 1211265..1211960 (+) 696 WP_002225197.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  NMV_RS05930 (NMV_1197) recD 1212028..1213773 (+) 1746 WP_014574005.1 exodeoxyribonuclease V subunit alpha Machinery gene
  NMV_RS05935 (NMV_1198) - 1213801..1214904 (-) 1104 WP_002240523.1 methyltransferase -
  NMV_RS12885 - 1214879..1215055 (-) 177 WP_226893060.1 nitric oxide synthase -
  NMV_RS05940 (NMV_1199) lon 1215155..1217605 (+) 2451 WP_002240522.1 endopeptidase La -
  NMV_RS05945 (NMV_1200) - 1217787..1218056 (+) 270 WP_002213508.1 HU family DNA-binding protein -
  NMV_RS05950 (NMV_1201) - 1218115..1218549 (-) 435 WP_002222429.1 hypothetical protein -

Sequence

Protein


Download         Length: 581 a.a.        Molecular weight: 62941.49 Da        Isoelectric Point: 5.6310

>NTDB_id=47744 NMV_RS05930 WP_014574005.1 1212028..1213773(+) (recD) [Neisseria meningitidis 8013]
MERQTDEFAQAAARAAIRFLARYAGSGSEVLANCTERLFQALQNGHSFIRLSGGEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAADTSAPDAAGARQNLAKWFQGTGSEGQRDAAALALLQSFMVITGGPGTGKTTTVAKLLA
LICGEDENLPNIALAAPTGKAAAHMARALHRAINGFDAPEAVRRHLLKLEGQTVHRLLKLRPPKMQAAFNPVYPLPFDVL
VIDEASMLDTVLMLQLLKAVKTGARVILLGDENQLPSVGIGDVLSVLSQKTVLDGETHQRLAGFLPEHGFSVSANPPLLA
QNTAHLSFSHRFGDNSGIGCLARAAVSGDEGAWALFDQFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNEAYCSHVRRKMNIPEHQAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPDFEPAFAMTVHKSQGSEYREVWLLPPSAAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGEETFRQAA
ATVKTRQTALGSMLERVFSQE

Nucleotide


Download         Length: 1746 bp        

>NTDB_id=47744 NMV_RS05930 WP_014574005.1 1212028..1213773(+) (recD) [Neisseria meningitidis 8013]
ATGGAACGGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCCGTTTTTTGGCACGCTATGCGGGTTCGGG
CAGCGAAGTGCTTGCAAACTGCACCGAACGCCTGTTTCAGGCATTGCAAAACGGTCATTCGTTTATCCGTTTGAGCGGTG
GCGAGGCTGACGCGCTGTCGGCACTCGCACCCGTGGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAGATAAAACGCTTGGCGGCAGCCGACACGTCCGCCCC
CGACGCGGCAGGCGCGAGGCAAAACCTCGCAAAATGGTTTCAAGGCACGGGCAGCGAAGGGCAGCGCGATGCCGCCGCCT
TGGCACTGTTGCAGTCTTTTATGGTGATTACCGGCGGGCCGGGAACGGGCAAAACGACAACGGTTGCCAAACTGCTGGCG
CTGATTTGCGGTGAAGACGAAAATCTTCCCAACATCGCGCTTGCCGCACCGACGGGCAAAGCGGCGGCACATATGGCGCG
CGCGCTGCACCGTGCAATCAACGGTTTTGACGCGCCGGAGGCCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTGAAGCTGCGCCCGCCCAAAATGCAGGCGGCGTTCAACCCTGTTTACCCGCTGCCGTTTGACGTATTG
GTTATCGATGAAGCCTCTATGCTGGATACGGTATTGATGTTGCAACTTTTAAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGCGATGAAAACCAGCTCCCGTCCGTCGGAATCGGGGACGTGCTGTCCGTCCTGTCGCAAAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGCTTCCTTCCGGAACACGGTTTCAGCGTCAGTGCAAATCCGCCCTTGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGCCGTATC
GGGCGATGAGGGGGCGTGGGCATTGTTTGACCAGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAACGCTCGAG
TCGAAAGGTTGTACCGGGCGCACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCAGGCATC
TCGGATATCGTGGTCCTGGCAGCTTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCAGCCATGTACGCCGCAA
AATGAACATACCGGAACATCAGGCCTATTTCGCCGGAGAACCGATTATGATCAGACAGAACGACTACGCGCTTGAACTGT
TCAACGGCGACATCGGATTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCCTGCCCGATTTCGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ATATCGGGAAGTCTGGCTGCTGCCGCCTTCCGCCGCACCTTCGGACGAAGGGGACGATGCATTGTCCGGATTGAGTAAGG
AGCTGTTATATACCGCCATTACCCGCGCGAGGGAGAAGTTCGTATTCTTCGGCGGAGAAGAAACCTTCCGGCAAGCTGCC
GCCACTGTCAAAACGCGTCAGACGGCATTGGGCAGTATGCTCGAGCGGGTATTTTCACAAGAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(125-290)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(494-548)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

94.664

100

0.947

Multiple sequence alignment