Detailed information NTG0477432

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: J2D70_RS04870
• Genome accession: NZ_CP071521
• Coordinates: 1017523..1018515 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081588.1
• Uniprot ID: Q540P0
• Organism: Escherichia coli strain 11202
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1012523..1023515

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J2D70_RS04840 (J2D70_04805)	ispD	1012584..1013294 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
J2D70_RS04845 (J2D70_04810)	ispF	1013294..1013773 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
J2D70_RS04850 (J2D70_04815)	truD	1013770..1014819 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
J2D70_RS04855 (J2D70_04820)	surE	1014800..1015561 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
J2D70_RS04860 (J2D70_04825)	pcm	1015555..1016181 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
J2D70_RS04865 (J2D70_04830)	nlpD	1016366..1017460 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
J2D70_RS04870 (J2D70_04835)	rpoS	1017523..1018515 (+)	993	WP_000081588.1	RNA polymerase sigma factor RpoS	Regulator
J2D70_RS04875 (J2D70_04840)	ygbN	1018609..1019973 (-)	1365	WP_000104441.1	GntP family transporter	-
J2D70_RS04880 (J2D70_04845)	ygbM	1020062..1020838 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
J2D70_RS04885 (J2D70_04850)	ygbL	1020843..1021481 (-)	639	WP_001278994.1	aldolase	-
J2D70_RS04890 (J2D70_04855)	otnK	1021573..1022739 (-)	1167	WP_001393459.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37971.86 Da
• Isoelectric Point: 4.5886

>NTDB_id=477432 J2D70_RS04870 WP_000081588.1 1017523..1018515(+) (rpoS) [Escherichia coli strain 11202]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=477432 J2D70_RS04870 WP_000081588.1 1017523..1018515(+) (rpoS) [Escherichia coli strain 11202]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAACAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

3D structure

• AlphaFold DB: Q540P0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715