Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   J1G54_RS03895 Genome accession   NZ_CP071491
Coordinates   721983..723533 (+) Length   516 a.a.
NCBI ID   WP_021116606.1    Uniprot ID   -
Organism   Glaesserella parasuis strain GHP1807     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 716983..728533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1G54_RS03870 (J1G54_03870) dnaX 717424..719442 (+) 2019 WP_021118771.1 DNA polymerase III subunit gamma/tau -
  J1G54_RS03875 (J1G54_03875) - 719448..720344 (+) 897 WP_005712691.1 ABC transporter ATP-binding protein -
  J1G54_RS03880 (J1G54_03880) - 720366..721121 (+) 756 WP_021112098.1 ABC transporter permease -
  J1G54_RS03885 (J1G54_03885) - 721238..721492 (+) 255 WP_021118772.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  J1G54_RS03890 (J1G54_03890) - 721489..721773 (+) 285 WP_010785923.1 type II toxin-antitoxin system RelE family toxin -
  J1G54_RS03895 (J1G54_03895) sbcB 721983..723533 (+) 1551 WP_021116606.1 exodeoxyribonuclease I Machinery gene
  J1G54_RS03900 (J1G54_03900) - 723616..724575 (+) 960 WP_203398968.1 SAM hydrolase/SAM-dependent halogenase family protein -
  J1G54_RS03905 (J1G54_03905) - 724724..725545 (+) 822 WP_005712684.1 PHP domain-containing protein -
  J1G54_RS03910 (J1G54_03910) ilvN 725652..726143 (-) 492 WP_005712683.1 acetolactate synthase small subunit -
  J1G54_RS03915 (J1G54_03915) - 726136..727857 (-) 1722 WP_005712682.1 acetolactate synthase 3 large subunit -

Sequence

Protein


Download         Length: 516 a.a.        Molecular weight: 58836.96 Da        Isoelectric Point: 5.3964

>NTDB_id=477325 J1G54_RS03895 WP_021116606.1 721983..723533(+) (sbcB) [Glaesserella parasuis strain GHP1807]
MVQTTFFIYDYESFGVDPATDRPAQFAGIRTDSDFNIIGEPVMFYCQQTEDYLPSPEAVMVTGITPQLCNQQGLPEPEFA
ARIHAEFSQPNTCVMGYNNIRYDDEMTRYTFFRNFFDPYEYSWKNGNSRWDLLDVVRACYALRPEGIEWAYDDEGMPSFK
LENLTKANGIAHDNAHDAMADVYATIAMAKLIKQKQPKLFDFFLQNRGKKALEEMIDVGEMTPLVHVSGMLGNYRGNTAW
VVPLAWHPTNRNAVIVCDLSGNINDLLNEPSEILRERLYTKKVELEAQGLYAVPLKLVHINKCPILAPAKTLLSENATRL
GIDRQSCLENLKLLKSQKSLVREKVIDIFSEERNYPASNNIETTLYDGFFEPADKNNMAILRNLKPEELAHHGLKFSDPR
IEPLLFHYRARHYSETLTRAEQVRWQKYCYQQLETKAEAFEQAVDLLSAQYHDNPEKIKLLTDLTAYAAQLMQPKATKSV
NSPASELLVSELNQLADQGLSKADKLKAIGALLNKK

Nucleotide


Download         Length: 1551 bp        

>NTDB_id=477325 J1G54_RS03895 WP_021116606.1 721983..723533(+) (sbcB) [Glaesserella parasuis strain GHP1807]
ATGGTTCAAACCACCTTTTTTATTTACGATTACGAAAGTTTTGGTGTCGATCCTGCTACAGATCGTCCTGCACAATTTGC
AGGGATCCGCACCGATAGCGATTTCAACATTATCGGTGAACCCGTAATGTTCTACTGCCAACAAACAGAAGATTATTTGC
CTTCACCAGAAGCTGTGATGGTAACAGGGATTACGCCACAGCTTTGTAATCAACAAGGGCTACCTGAACCTGAATTTGCC
GCTCGTATTCACGCCGAATTTAGCCAACCTAACACCTGCGTAATGGGATATAACAACATTCGCTATGATGATGAAATGAC
CCGTTATACCTTTTTCCGCAATTTTTTCGATCCTTATGAATATAGCTGGAAAAACGGCAATTCTCGTTGGGATCTTCTTG
ATGTTGTGCGTGCCTGTTATGCTTTACGTCCAGAAGGGATAGAATGGGCGTATGATGATGAAGGTATGCCGAGCTTTAAA
TTAGAAAATTTGACCAAAGCAAATGGTATTGCTCACGACAACGCTCACGATGCAATGGCTGATGTGTATGCTACTATTGC
AATGGCAAAGTTAATCAAACAAAAACAACCTAAATTATTCGACTTTTTCCTGCAAAATCGAGGTAAAAAAGCCCTAGAAG
AGATGATTGATGTCGGTGAAATGACACCGCTTGTTCACGTTTCTGGAATGTTAGGCAACTATCGAGGTAACACCGCTTGG
GTTGTGCCATTGGCTTGGCATCCGACTAATCGAAACGCAGTGATTGTATGTGATCTATCGGGGAATATAAACGACCTATT
GAATGAGCCAAGCGAAATATTGCGTGAACGTCTTTATACCAAAAAAGTAGAATTAGAAGCTCAAGGGCTTTATGCTGTTC
CACTAAAACTCGTGCATATTAATAAATGCCCAATTTTAGCTCCAGCCAAAACGTTACTGTCTGAAAATGCAACACGTTTA
GGCATCGATCGTCAATCCTGTTTAGAAAATTTAAAACTGCTAAAATCCCAAAAAAGCCTTGTGCGAGAAAAGGTTATTGA
TATTTTTTCTGAGGAAAGGAATTATCCAGCGTCAAATAATATAGAAACCACGTTATACGATGGCTTTTTTGAACCTGCAG
ATAAAAACAATATGGCGATTTTGCGAAATCTAAAACCTGAAGAGCTTGCACATCACGGCTTGAAATTTAGCGATCCAAGA
ATTGAACCTCTACTTTTCCATTATCGAGCAAGACATTACTCAGAAACCTTAACACGCGCAGAACAAGTACGCTGGCAAAA
GTATTGCTATCAACAACTTGAAACAAAAGCAGAGGCCTTTGAACAAGCGGTTGATCTGTTATCGGCTCAATATCACGATA
ATCCTGAAAAGATAAAATTATTGACAGATCTCACCGCTTACGCAGCACAATTAATGCAGCCTAAAGCCACCAAGTCCGTC
AATTCACCAGCTTCAGAGCTATTAGTATCGGAATTAAATCAACTTGCTGATCAAGGGCTGAGTAAAGCGGATAAATTAAA
AGCGATTGGGGCTTTGCTTAATAAAAAATAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(207-469)

Exonuclease (RNase_T)

(8-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

56.29

90.891

0.512