Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   J1G53_RS10415 Genome accession   NZ_CP071490
Coordinates   2069708..2071087 (-) Length   459 a.a.
NCBI ID   WP_075592761.1    Uniprot ID   -
Organism   Glaesserella parasuis strain GHP1808     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2064708..2076087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1G53_RS10390 (J1G53_10390) ggt 2065508..2067259 (+) 1752 Protein_2017 gamma-glutamyltransferase -
  J1G53_RS10395 (J1G53_10395) - 2067402..2067584 (+) 183 WP_035499627.1 hypothetical protein -
  J1G53_RS10400 (J1G53_10400) - 2067551..2067970 (+) 420 Protein_2019 transposase -
  J1G53_RS10405 (J1G53_10405) ftsX 2068119..2069045 (-) 927 WP_020457628.1 permease-like cell division protein FtsX -
  J1G53_RS10410 (J1G53_10410) ftsE 2069055..2069708 (-) 654 WP_005714230.1 cell division ATP-binding protein FtsE -
  J1G53_RS10415 (J1G53_10415) pilA 2069708..2071087 (-) 1380 WP_075592761.1 signal recognition particle-docking protein FtsY Machinery gene
  J1G53_RS10420 (J1G53_10420) rsmD 2071186..2071773 (+) 588 WP_075592760.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  J1G53_RS10425 (J1G53_10425) - 2071960..2072208 (-) 249 WP_234923268.1 hypothetical protein -
  J1G53_RS10430 (J1G53_10430) - 2072208..2072651 (-) 444 WP_015939865.1 nuclear transport factor 2 family protein -
  J1G53_RS10435 (J1G53_10435) - 2072786..2072902 (+) 117 Protein_2026 helix-turn-helix domain-containing protein -
  J1G53_RS10440 (J1G53_10440) rhuM 2072983..2073556 (-) 574 Protein_2027 RhuM family protein -
  J1G53_RS10445 (J1G53_10445) - 2073743..2074102 (-) 360 WP_010787368.1 hypothetical protein -
  J1G53_RS10450 (J1G53_10450) - 2074146..2074517 (+) 372 WP_010787367.1 LysR substrate-binding domain-containing protein -
  J1G53_RS10455 (J1G53_10455) - 2074541..2076082 (+) 1542 WP_202113897.1 PLP-dependent aminotransferase family protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 50683.92 Da        Isoelectric Point: 4.2333

>NTDB_id=477300 J1G53_RS10415 WP_075592761.1 2069708..2071087(-) (pilA) [Glaesserella parasuis strain GHP1808]
MSDEKKKKGFWSWLGFGKKEDVEQTEATEEKVEEKAEVQPEEITERAVSSKQYFAKDEEVIEENITTENVAEVPTEVVED
VIVEQTAEEAAETTTETVEQAVVEPTAETTESSDEQTEELHISEQNPPLVEDESPAEERVQADEYQEKPTSEGGFFSRLI
KGLIKTKQSIGSGFRNFFSGKKIDDELFEELEEQLLVADLGMPTTTKIIKNLTEHATKQQLRDAELLYQQLKVELADVLK
PVAQSLVLEDKKPYVILMVGVNGVGKTTTIGKLARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVVAQSTGADS
ASVIFDAMQSAAAKGIDVLIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAKLFNEAVGL
TGITLTKLDGTAKGGVIFAIADQFNIPIRFIGVGEKIDDLRSFDAEEFIEALFTHEDEK

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=477300 J1G53_RS10415 WP_075592761.1 2069708..2071087(-) (pilA) [Glaesserella parasuis strain GHP1808]
ATGTCAGATGAAAAGAAGAAAAAAGGCTTTTGGTCTTGGTTAGGTTTCGGGAAAAAAGAAGATGTTGAACAAACGGAAGC
GACCGAAGAAAAAGTAGAAGAGAAAGCAGAAGTTCAGCCAGAGGAAATCACCGAACGAGCGGTCAGTTCTAAGCAATATT
TTGCAAAAGATGAAGAAGTTATCGAAGAAAATATAACAACCGAAAACGTGGCTGAAGTCCCAACTGAAGTTGTCGAAGAT
GTTATCGTTGAACAAACGGCAGAAGAAGCGGCTGAAACCACCACTGAAACTGTCGAGCAAGCGGTTGTTGAACCCACAGC
AGAAACGACCGAAAGCTCAGACGAACAAACGGAAGAGTTGCACATTTCTGAGCAAAATCCACCGCTTGTCGAAGATGAAA
GTCCAGCCGAAGAACGTGTTCAGGCAGATGAATATCAAGAAAAGCCAACCAGCGAAGGCGGTTTTTTCAGCCGTTTAATC
AAAGGATTAATCAAAACGAAACAGAGTATCGGCTCTGGCTTCCGTAATTTCTTTAGTGGTAAGAAAATTGATGATGAGTT
GTTTGAAGAGCTAGAAGAACAGTTATTGGTGGCGGATTTAGGTATGCCGACTACCACGAAAATCATTAAAAATTTAACCG
AACACGCCACAAAACAGCAATTACGCGATGCTGAGTTGCTCTATCAGCAATTAAAAGTTGAACTGGCTGATGTGTTAAAA
CCTGTTGCTCAGTCATTGGTATTGGAAGATAAAAAACCTTATGTGATCTTGATGGTGGGGGTAAATGGGGTTGGTAAAAC
AACTACTATCGGTAAATTAGCACGAAAATTCCAAGCGGAAGGAAAATCAGTGATGTTAGCGGCCGGCGATACGTTCCGTG
CGGCGGCCGTTGAACAGCTTCAAGTGTGGGGCGAACGCAATAACATTCCTGTTGTTGCACAAAGTACTGGGGCTGACTCT
GCGTCAGTGATTTTTGATGCAATGCAATCGGCAGCAGCAAAAGGGATTGATGTGTTAATCGCAGACACCGCAGGACGCTT
GCAGAACAAAAATAACTTAATGGACGAGTTGAAAAAAATAGTGCGAGTAATGAAAAAATATGATGAAACCGCACCGCACG
AAATTATGCTTACCCTTGATGCTGGTACAGGACAGAATGCGATCAGCCAAGCGAAACTGTTTAATGAAGCGGTTGGTTTA
ACGGGGATTACCTTAACAAAACTGGACGGTACTGCGAAAGGTGGGGTAATTTTTGCGATTGCGGATCAATTTAATATTCC
AATTCGCTTTATTGGGGTGGGTGAAAAAATTGATGATCTACGCTCATTTGATGCCGAAGAATTTATTGAAGCCTTATTTA
CTCACGAGGACGAGAAGTAA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(170-235)

SRP54-type protein, GTPase domain (SRP54)

(254-453)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

46.667

84.967

0.397