Detailed information NTG0477264

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: J1G53_RS02760
• Genome accession: NZ_CP071490
• Coordinates: 562261..563604 (+)
• Length: 447 a.a.
• NCBI ID: WP_207342538.1
• Uniprot ID: -
• Organism: Glaesserella parasuis strain GHP1808
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 557261..568604

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J1G53_RS02740 (J1G53_02740)	pntA	557771..559303 (-)	1533	WP_021114578.1	Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha	-
J1G53_RS02745 (J1G53_02745)	-	559580..560632 (+)	1053	WP_005710531.1	rod shape-determining protein	-
J1G53_RS02750 (J1G53_02750)	mreC	560724..561773 (+)	1050	WP_075630474.1	rod shape-determining protein MreC	-
J1G53_RS02755 (J1G53_02755)	mreD	561773..562261 (+)	489	WP_005710534.1	rod shape-determining protein MreD	-
J1G53_RS02760 (J1G53_02760)	rarA	562261..563604 (+)	1344	WP_207342538.1	replication-associated recombination protein A	Machinery gene
J1G53_RS02765 (J1G53_02765)	-	563607..565079 (-)	1473	WP_207342539.1	surface lipoprotein assembly modifier	-
J1G53_RS02770 (J1G53_02770)	-	565396..566019 (+)	624	WP_234923278.1	energy transducer TonB	-
J1G53_RS02775 (J1G53_02775)	-	566037..566705 (+)	669	WP_021110458.1	MotA/TolQ/ExbB proton channel family protein	-
J1G53_RS02780 (J1G53_02780)	-	566705..567115 (+)	411	WP_021110459.1	ExbD/TolR family protein	-

Sequence

Protein

• Length: 447 a.a.
• Molecular weight: 50123.96 Da
• Isoelectric Point: 6.1346

>NTDB_id=477264 J1G53_RS02760 WP_207342538.1 562261..563604(+) (rarA) [Glaesserella parasuis strain GHP1808]
MNSLSFDFSADFRPLSARMRPRTLAEYVGQSHLIAEGKPLRRAIEAGHSHSMIFWGPPGTGKTTLAEIIANELDAEVERL
SAVTSGIKEIRDAIEKAKLNRQSGRRTLLFVDEVHRFNKSQQDAFLPHIEDGTLIFIGATTENPSFELNNALLSRARIYI
LKPLQAVDILKILQNAIADKERGLGNEKLIIQDDVLQLLADYVNGDGRFSLNCLELMCDMAEQLPQGKLLDKALLTEVLG
ERQARFDKGGDRYYDLISALHKSIRGSSPDGALYWYARILTAGGDPLYVARRLLAIASEDIGNADPRAMQVALAAWDCYT
RVGAYEGERAIAQAVIYLAVAPKSNAVYTAFKQAKRLAQEGKDYDVPEHLRNAPTNLMKSLGYGEEYRYAHDEPNAYAAG
ENYFPPELKDTQFYFPTERGMEKQIKEKMAWLNGLDLQSEVQRYNKQ

Nucleotide

• Length: 1344 bp

>NTDB_id=477264 J1G53_RS02760 WP_207342538.1 562261..563604(+) (rarA) [Glaesserella parasuis strain GHP1808]
ATGAACAGCTTATCTTTCGATTTTTCTGCGGATTTTCGTCCCCTTTCCGCTCGAATGCGACCACGCACTCTAGCTGAATA
TGTCGGACAATCACACCTGATCGCCGAAGGCAAACCCCTTCGCCGAGCCATTGAAGCAGGACATAGCCACTCAATGATTT
TCTGGGGTCCCCCAGGAACAGGCAAAACCACCCTTGCAGAAATTATCGCAAACGAACTTGATGCCGAAGTTGAACGCCTA
TCCGCCGTCACCAGCGGTATCAAAGAGATCCGAGATGCCATCGAAAAAGCCAAACTCAACCGACAATCCGGCAGACGTAC
TTTACTCTTTGTTGATGAAGTTCATCGTTTTAACAAAAGCCAACAAGATGCCTTTTTACCCCATATTGAAGACGGCACCC
TTATTTTTATCGGTGCAACCACTGAAAATCCGTCCTTTGAACTGAATAACGCCTTGCTGTCAAGGGCAAGAATTTACATT
CTCAAGCCACTACAAGCGGTCGATATTCTAAAAATTTTGCAAAATGCCATTGCAGATAAAGAGCGTGGGCTAGGTAATGA
AAAACTCATCATTCAAGATGATGTGCTTCAACTGCTGGCGGACTACGTCAATGGCGACGGACGTTTTTCTCTCAACTGCC
TTGAATTAATGTGCGATATGGCAGAACAATTACCACAAGGAAAATTGCTGGATAAAGCCTTGCTCACCGAAGTGTTGGGC
GAACGCCAAGCCCGTTTCGACAAAGGTGGCGACCGCTATTACGACCTGATTTCTGCGTTACACAAATCCATTCGAGGATC
TTCTCCTGACGGTGCATTGTACTGGTATGCTCGTATTTTAACCGCTGGAGGCGATCCACTGTATGTTGCTCGCCGACTAC
TTGCGATAGCCTCAGAAGATATAGGCAATGCCGACCCAAGGGCAATGCAAGTCGCCCTTGCAGCGTGGGATTGTTATACC
AGAGTAGGGGCTTACGAAGGCGAACGGGCTATCGCTCAAGCGGTGATTTACCTTGCCGTTGCCCCAAAAAGTAATGCCGT
TTACACCGCATTCAAACAAGCCAAACGCCTAGCTCAAGAAGGCAAAGATTACGACGTTCCCGAACATCTGCGAAACGCAC
CGACTAACTTAATGAAATCCTTAGGTTACGGCGAAGAATACCGCTACGCCCACGACGAACCTAACGCCTACGCCGCAGGG
GAAAACTACTTCCCCCCTGAACTGAAAGACACCCAATTCTACTTCCCAACCGAACGTGGAATGGAAAAGCAGATCAAAGA
AAAAATGGCGTGGTTGAACGGATTAGATTTGCAGAGTGAGGTGCAGAGGTATAACAAACAATAA

Domains

Predicted by InterProScan.

• MgsA AAA+ ATPase C terminal (MgsA_C) (266-432)

• AAA C-terminal domain (AAA_assoc_2) (186-265)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (19-143)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	39.512	91.723	0.362