Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   J1G50_RS07600 Genome accession   NZ_CP071489
Coordinates   1541494..1543044 (-) Length   516 a.a.
NCBI ID   WP_010785922.1    Uniprot ID   -
Organism   Glaesserella parasuis strain YHP1815     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1536494..1548044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1G50_RS07580 (J1G50_07580) - 1537170..1538891 (+) 1722 WP_021114603.1 acetolactate synthase 3 large subunit -
  J1G50_RS07585 (J1G50_07585) ilvN 1538884..1539375 (+) 492 WP_005712683.1 acetolactate synthase small subunit -
  J1G50_RS07590 (J1G50_07590) - 1539482..1540303 (-) 822 WP_160404629.1 PHP domain-containing protein -
  J1G50_RS07595 (J1G50_07595) - 1540452..1541411 (-) 960 WP_160404628.1 SAM hydrolase/SAM-dependent halogenase family protein -
  J1G50_RS07600 (J1G50_07600) sbcB 1541494..1543044 (-) 1551 WP_010785922.1 exodeoxyribonuclease I Machinery gene
  J1G50_RS07605 (J1G50_07605) - 1543254..1543538 (-) 285 WP_010785923.1 type II toxin-antitoxin system RelE family toxin -
  J1G50_RS07610 (J1G50_07610) - 1543535..1543789 (-) 255 WP_021118772.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  J1G50_RS07615 (J1G50_07615) - 1543906..1544661 (-) 756 WP_021112098.1 ABC transporter permease -
  J1G50_RS07620 (J1G50_07620) - 1544683..1545579 (-) 897 WP_005712691.1 ABC transporter ATP-binding protein -
  J1G50_RS07625 (J1G50_07625) dnaX 1545585..1547603 (-) 2019 WP_021118771.1 DNA polymerase III subunit gamma/tau -

Sequence

Protein


Download         Length: 516 a.a.        Molecular weight: 58837.00 Da        Isoelectric Point: 5.3964

>NTDB_id=477226 J1G50_RS07600 WP_010785922.1 1541494..1543044(-) (sbcB) [Glaesserella parasuis strain YHP1815]
MVQTTFFIYDYESFGVDPATDRPAQFAGIRTDSDFNIIGEPVMFYCQQTEDYLPSPEAVMVTGITPQLCNQQGLPEPEFA
ARIHAEFSQPNTCVMGYNNIRYDDEMTRYTFFRNFFDPYEYSWKNGNSRWDLLDVVRACYALRPEGIEWAYDDEGMPSFK
LENLTKANGIAHDNAHDAMADVYATIAMAKLIKQKQPKLFDFFLQNRGKKALEEMIDVGEMTPLVHVSGMLGNYRGNTAW
VVPLAWHPTNRNAVIVCDLSGNINDLLNEPSEILRERLYTKKVELEAQGLYAVPLKLVHINKCPILAPAKTLLSENATRL
GIDRQACLENLKLLKSQKSLVREKVIDIFSEERNYLASNNIETTLYDGFFEPADKNNMAILRNLKPEELAHHGLKFSDPR
IEPLLFHYRARHYSETLTRAEQVRWQKYCYQQLETKAEAFEQAVDLLSAQYHDNPEKIKLLTDLTAYAAQLMQPKATKSV
NSPASELLVSELNQLADQGLSKADKLKAIGALLNKK

Nucleotide


Download         Length: 1551 bp        

>NTDB_id=477226 J1G50_RS07600 WP_010785922.1 1541494..1543044(-) (sbcB) [Glaesserella parasuis strain YHP1815]
ATGGTTCAAACCACCTTTTTTATTTACGATTACGAAAGTTTTGGTGTCGATCCTGCTACAGATCGTCCTGCACAATTTGC
AGGGATCCGCACCGATAGCGATTTCAACATTATCGGTGAACCCGTAATGTTCTACTGCCAACAAACAGAAGATTATTTGC
CTTCACCAGAAGCTGTGATGGTAACAGGGATTACACCACAGCTTTGTAATCAACAAGGGCTACCTGAACCTGAATTTGCC
GCTCGTATTCACGCCGAATTTAGCCAACCTAACACCTGCGTAATGGGATATAACAACATTCGCTATGATGATGAAATGAC
CCGTTATACCTTTTTCCGCAATTTTTTCGATCCTTATGAATATAGCTGGAAAAACGGCAATTCTCGTTGGGATCTTCTTG
ATGTTGTGCGTGCCTGTTATGCTTTACGTCCAGAAGGGATAGAATGGGCGTATGATGATGAAGGTATGCCGAGCTTTAAA
TTAGAAAATTTGACCAAAGCAAATGGTATTGCTCACGACAACGCTCACGATGCAATGGCTGATGTGTATGCTACTATTGC
AATGGCAAAGTTAATCAAACAAAAACAACCTAAATTATTCGACTTTTTCCTGCAAAATCGAGGTAAAAAAGCCCTAGAAG
AGATGATTGATGTCGGTGAAATGACACCGCTTGTTCACGTTTCTGGAATGTTAGGCAACTATCGAGGTAACACCGCTTGG
GTTGTGCCATTGGCTTGGCATCCGACTAATCGAAACGCAGTGATTGTATGTGATCTATCGGGGAATATAAACGACCTATT
GAATGAGCCAAGCGAAATATTGCGTGAACGTCTTTATACCAAAAAAGTAGAATTAGAAGCTCAAGGGCTTTATGCTGTTC
CACTAAAACTCGTGCATATTAATAAATGCCCAATTTTAGCTCCAGCCAAAACGTTACTGTCTGAAAATGCAACACGTTTA
GGCATCGATCGTCAAGCCTGTTTAGAAAATTTAAAACTGCTAAAATCCCAAAAAAGCCTTGTGCGAGAAAAGGTTATTGA
TATTTTTTCTGAGGAAAGGAATTATCTAGCGTCAAATAATATAGAAACCACGTTATACGATGGCTTTTTTGAACCTGCAG
ATAAAAACAATATGGCGATTTTGCGAAATCTAAAACCTGAAGAGCTTGCACATCACGGCTTGAAATTTAGCGATCCAAGA
ATTGAACCTCTACTTTTCCATTATCGAGCAAGACATTACTCAGAAACCTTAACACGCGCAGAACAAGTACGCTGGCAAAA
GTATTGCTATCAACAACTTGAAACAAAAGCAGAGGCCTTTGAACAAGCGGTTGATCTGTTATCGGCTCAATATCACGATA
ATCCTGAAAAGATAAAATTACTGACAGATCTCACCGCTTACGCAGCACAATTAATGCAGCCTAAAGCCACCAAGTCCGTC
AATTCACCAGCTTCAGAGCTATTAGTATCGGAATTAAATCAACTTGCTGATCAAGGGCTGAGTAAAGCGGATAAATTAAA
AGCGATTGGGGCTTTGCTTAATAAAAAATAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(8-186)

Exonuclease C-terminal (ExoI_SH3)

(207-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

56.29

90.891

0.512