Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   H7792_RS01415 Genome accession   NZ_CP060643
Coordinates   261540..262610 (+) Length   356 a.a.
NCBI ID   WP_111713601.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain TSPY416     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 256540..267610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7792_RS01400 (H7792_01400) amiA 257068..259038 (+) 1971 WP_053308192.1 peptide ABC transporter substrate-binding protein Regulator
  H7792_RS01405 (H7792_01405) amiC 259103..260605 (+) 1503 WP_053308193.1 ABC transporter permease Regulator
  H7792_RS01410 (H7792_01410) amiD 260605..261531 (+) 927 WP_002986004.1 oligopeptide ABC transporter permease OppC Regulator
  H7792_RS01415 (H7792_01415) amiE 261540..262610 (+) 1071 WP_111713601.1 ABC transporter ATP-binding protein Regulator
  H7792_RS01420 (H7792_01420) amiF 262603..263526 (+) 924 WP_002986000.1 ABC transporter ATP-binding protein Regulator
  H7792_RS08835 (H7792_01425) - 263564..263647 (-) 84 Protein_236 IS3 family transposase -
  H7792_RS08840 - 263781..264061 (-) 281 Protein_237 IS3 family transposase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 39685.74 Da        Isoelectric Point: 5.6707

>NTDB_id=477189 H7792_RS01415 WP_111713601.1 261540..262610(+) (amiE) [Streptococcus pyogenes strain TSPY416]
MTKENNVILTAKDVVVEFDVRDRVLTAIRNVSLELVEGEVLAFVGESGSGKSVLTKTFTGMLESNGRIANGSIVYRGQEL
TDLKTNKEWAKIRGSKIATIFQDPLTSLSPIKTIGSQITEVIIKHQKVSHAKAKEMALDYMNKVGIPNAKKRFEDYPFEY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIVELLKSLQREYHFTIIFITHDLGVVASIADKVAVMYAGEIVE
FGTVEEIFYDPRHPYTWSLLSSLPQLADESGELYAIPGTPPSLYSPIIGDAFALRSEYAMVLDFEKAPPAINVSETHWAK
TWLLHPEAPKVQKPEVIQDLHQKILRKMSQQEEGNV

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=477189 H7792_RS01415 WP_111713601.1 261540..262610(+) (amiE) [Streptococcus pyogenes strain TSPY416]
ATGACAAAAGAAAATAATGTAATCTTAACTGCCAAAGATGTGGTGGTAGAATTTGATGTGCGTGATCGTGTTTTAACAGC
TATCCGTAACGTCTCACTGGAACTTGTTGAAGGAGAAGTCCTTGCTTTTGTAGGGGAATCAGGCTCAGGTAAATCTGTTT
TAACAAAGACCTTTACAGGGATGTTGGAGTCTAATGGACGCATTGCTAATGGTTCAATTGTCTATCGTGGGCAAGAATTG
ACAGATTTAAAAACAAATAAAGAGTGGGCAAAGATTCGCGGCTCAAAAATCGCAACGATTTTCCAAGACCCACTGACCAG
TCTTAGTCCCATTAAAACTATCGGCAGCCAAATCACAGAAGTGATTATTAAGCACCAAAAAGTAAGTCATGCCAAAGCTA
AAGAAATGGCCCTTGATTACATGAATAAAGTGGGTATCCCAAATGCCAAAAAACGCTTTGAAGATTACCCATTTGAGTAT
TCAGGAGGAATGCGTCAACGTATTGTTATCGCTATTGCTTTAGCTTGTCGCCCAGATATTCTTATCTGTGATGAGCCAAC
AACAGCCCTTGATGTGACTATTCAAGCTCAAATCGTTGAGTTATTGAAGTCGCTTCAACGAGAATATCATTTCACCATTA
TCTTTATTACGCACGATTTAGGTGTTGTGGCAAGCATTGCAGATAAAGTGGCTGTCATGTATGCAGGAGAAATTGTTGAA
TTTGGAACAGTCGAAGAGATTTTCTATGATCCAAGACACCCCTATACATGGAGTTTGCTGTCTAGCTTACCGCAGTTGGC
AGATGAATCTGGTGAACTTTACGCTATTCCAGGAACGCCTCCATCACTTTATTCACCAATTATCGGAGATGCCTTTGCAC
TTCGCTCAGAATATGCTATGGTTTTAGACTTTGAAAAAGCACCTCCGGCGATTAACGTATCTGAGACTCATTGGGCCAAA
ACATGGCTTTTACACCCAGAGGCTCCAAAAGTTCAAAAACCAGAAGTCATTCAAGATTTGCATCAAAAAATCTTAAGGAA
AATGTCACAACAGGAGGAAGGAAATGTCTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(29-187)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-299)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

76.389

100

0.772
  amiE Streptococcus thermophilus LMG 18311

75.278

100

0.761
  amiE Streptococcus thermophilus LMD-9

75.278

100

0.761
  oppD Streptococcus mutans UA159

56.38

94.663

0.534