Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   J1G47_RS06420 Genome accession   NZ_CP071487
Coordinates   1277962..1280238 (+) Length   758 a.a.
NCBI ID   WP_207326852.1    Uniprot ID   -
Organism   Glaesserella parasuis strain YHP1818     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1272962..1285238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1G47_RS06400 (J1G47_06400) galU 1273054..1273941 (-) 888 WP_160428375.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  J1G47_RS06405 (J1G47_06405) csrA 1274121..1274306 (-) 186 WP_005711547.1 carbon storage regulator CsrA -
  J1G47_RS06410 (J1G47_06410) alaS 1274370..1276997 (-) 2628 WP_160414253.1 alanine--tRNA ligase -
  J1G47_RS06415 (J1G47_06415) uspA 1277222..1277647 (-) 426 WP_005711551.1 universal stress protein UspA -
  J1G47_RS06420 (J1G47_06420) rec2 1277962..1280238 (+) 2277 WP_207326852.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  J1G47_RS12205 - 1280379..1280498 (-) 120 Protein_1248 NAD-dependent epimerase/dehydratase family protein -
  J1G47_RS06430 (J1G47_06430) - 1280591..1280887 (-) 297 WP_021110790.1 YciI family protein -
  J1G47_RS06435 (J1G47_06435) yciA 1280899..1281339 (-) 441 WP_005711558.1 acyl-CoA thioester hydrolase YciA -
  J1G47_RS06440 (J1G47_06440) - 1281323..1281886 (-) 564 WP_021113566.1 septation protein A -
  J1G47_RS06445 (J1G47_06445) - 1281895..1282623 (-) 729 WP_026917083.1 hypothetical protein -
  J1G47_RS06450 (J1G47_06450) yfbV 1282802..1283236 (+) 435 WP_005711563.1 terminus macrodomain insulation protein YfbV -
  J1G47_RS06455 (J1G47_06455) tadA 1283218..1283754 (-) 537 WP_207326515.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 758 a.a.        Molecular weight: 86264.81 Da        Isoelectric Point: 9.0154

>NTDB_id=477164 J1G47_RS06420 WP_207326852.1 1277962..1280238(+) (rec2) [Glaesserella parasuis strain YHP1818]
MSIDRVCLMLFFGLLPLIVLPASWLGYVMVFSLALALWGVWRGKLGILLLGGVLAVSYAQIIQLAKKHQEQTAVKVQERV
LVKQILKQQEYQTAVVERANGDYVYVNWQADEPLILEASYNAELVLKPLSARLNDGNFDRQKWYVAQHISATATVKKAVK
VNEQQGLRAIWLDRMREQTAPFATQGLLLALAFGERAWLSQSHWEIFQQTTTAHLIAISGSHIVLVYLLAFWAVKAGQWL
LLRFRCLKAVGLSLYFARGVGWCVALGYSFLAGFQIPTVRAMVAISLVLLVQYARRHYTPWQLWLRGVVLLVVFDPLTLL
SDSFWLSVLAVASLIIWYQAFPLKRFDFVKNMQNRVMKLLLELFHLQLGIWLVFSPIQLSFFDGTSPFALLANLIIVPLY
SFILIPLILFSLLTDNLFQTWWLCHQLAEWGIDWIEPFSHHWLYLSVDQQWGLICLNLLIIIGLYGVFQQRFSLYYGLAT
VALPLALWIGFHFVKDTLKPPLVKWVNFDVGQGLAMGLIYQHQGKQKAILYDTGVAWQGGTMAELEILPYLRREGIVVEA
IFVSHDDNDHAGGVLPLLQAYPNARLILSGKNHYSNQVAEPCIAGNQWQFSTMHLEAIYPLQLSERAKNEHSCVLRVSIG
QYRLLLTGDSGIAEERQYASQIGKIDFLQVGHHGSKTSTSQTLLAHIQPTWAIISAGRWNPWKMPNSQVIQRLEQYQVKW
LNTAQVGMIQVDFYSDNYNISTARNRFSPWYQGIGANE

Nucleotide


Download         Length: 2277 bp        

>NTDB_id=477164 J1G47_RS06420 WP_207326852.1 1277962..1280238(+) (rec2) [Glaesserella parasuis strain YHP1818]
ATGTCTATTGATCGTGTCTGTTTAATGCTCTTTTTCGGTTTATTGCCGTTGATTGTTCTGCCTGCTTCGTGGCTTGGCTA
TGTGATGGTATTTTCTCTTGCCCTTGCATTATGGGGAGTATGGCGTGGGAAATTGGGGATCTTGCTGTTGGGTGGTGTGT
TAGCGGTGAGTTACGCCCAGATTATACAACTTGCAAAAAAACATCAGGAACAGACCGCTGTTAAGGTGCAAGAGCGGGTG
TTAGTGAAGCAAATTTTAAAACAGCAAGAATATCAAACTGCCGTTGTAGAGCGTGCTAATGGGGACTATGTTTATGTCAA
TTGGCAAGCAGATGAGCCATTGATACTGGAAGCAAGTTATAACGCGGAACTGGTATTGAAGCCTTTGTCCGCTCGCTTAA
ATGATGGCAATTTTGATCGACAAAAATGGTATGTGGCTCAACATATCTCAGCAACAGCTACGGTCAAAAAAGCAGTAAAA
GTGAACGAACAACAAGGCTTGCGTGCAATTTGGCTTGATCGTATGCGAGAACAGACCGCCCCTTTTGCAACGCAAGGGTT
ACTGCTTGCCCTTGCTTTTGGTGAACGGGCTTGGTTAAGTCAAAGCCATTGGGAGATCTTTCAGCAAACAACCACTGCTC
ATTTGATTGCCATTTCAGGCTCGCATATTGTTCTGGTTTATCTGTTAGCCTTTTGGGCGGTGAAAGCCGGGCAGTGGTTA
TTATTGCGATTTCGTTGTCTAAAAGCGGTGGGGTTGTCCTTGTATTTTGCAAGGGGAGTAGGGTGGTGTGTGGCACTGGG
ATATAGTTTTTTGGCAGGCTTCCAAATTCCAACGGTACGGGCAATGGTGGCGATTTCATTGGTTTTGCTGGTGCAATATG
CTCGTCGTCATTATACGCCTTGGCAGTTATGGCTTCGTGGTGTGGTACTATTAGTCGTCTTTGATCCGCTGACGTTACTG
TCTGATAGCTTTTGGCTCTCTGTTTTGGCTGTTGCTAGCCTAATTATTTGGTATCAGGCTTTTCCACTCAAGCGGTTTGA
TTTTGTCAAAAATATGCAAAATCGAGTGATGAAGTTGCTGTTAGAGTTGTTTCATCTGCAGTTAGGCATTTGGCTAGTGT
TCTCGCCTATTCAACTCAGTTTTTTTGATGGCACATCACCTTTCGCTTTATTAGCCAATTTGATCATTGTTCCACTTTAT
AGTTTTATTCTTATCCCATTGATTTTATTTAGTTTATTAACAGATAACCTATTTCAAACTTGGTGGCTTTGCCATCAACT
TGCAGAGTGGGGGATTGATTGGATTGAGCCATTTTCCCATCATTGGCTCTATTTAAGTGTCGATCAACAATGGGGATTAA
TATGCCTTAATCTATTGATTATAATAGGATTATATGGTGTTTTTCAGCAACGTTTTTCTCTCTATTATGGGTTAGCAACA
GTGGCATTGCCTTTAGCATTGTGGATCGGATTTCATTTTGTAAAAGATACACTTAAACCACCGCTTGTAAAATGGGTGAA
TTTCGATGTGGGGCAAGGGTTGGCAATGGGATTGATTTATCAACACCAAGGTAAACAGAAAGCCATTCTCTATGATACAG
GCGTTGCGTGGCAAGGTGGCACAATGGCGGAATTGGAAATACTGCCCTATTTACGCCGTGAAGGGATAGTGGTCGAAGCT
ATTTTTGTTAGCCACGATGATAACGATCACGCTGGGGGCGTTTTGCCATTACTACAAGCCTACCCAAATGCACGGTTGAT
CCTTTCGGGTAAAAATCATTATAGTAACCAAGTCGCCGAGCCTTGTATAGCAGGCAATCAGTGGCAGTTCAGCACAATGC
ACCTTGAAGCGATTTATCCTTTACAACTGAGCGAGCGAGCTAAAAATGAACACTCTTGTGTATTACGAGTGTCGATAGGG
CAATATAGATTGCTTCTTACTGGGGATAGTGGGATTGCGGAAGAACGACAATATGCAAGCCAGATCGGTAAGATCGATTT
TCTTCAAGTAGGACACCACGGCAGTAAAACCAGTACCAGCCAAACTTTGTTAGCTCACATCCAACCCACTTGGGCGATTA
TTTCGGCTGGGCGTTGGAACCCGTGGAAAATGCCAAATAGTCAAGTTATTCAACGGCTTGAGCAGTATCAAGTGAAGTGG
CTTAATACTGCTCAAGTGGGAATGATCCAAGTCGATTTTTATTCAGATAATTACAACATTTCCACCGCAAGAAACCGCTT
TAGTCCTTGGTATCAGGGGATAGGGGCAAATGAATAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(524-693)

Competence protein (Competence)

(191-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

41.967

95.251

0.4