Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   J1G47_RS03970 Genome accession   NZ_CP071487
Coordinates   774458..776008 (+) Length   516 a.a.
NCBI ID   WP_075592516.1    Uniprot ID   -
Organism   Glaesserella parasuis strain YHP1818     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 769458..781008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1G47_RS03945 (J1G47_03945) dnaX 769648..771666 (+) 2019 WP_207326770.1 DNA polymerase III subunit gamma/tau -
  J1G47_RS03950 (J1G47_03950) - 771672..772568 (+) 897 WP_005712691.1 ABC transporter ATP-binding protein -
  J1G47_RS03955 (J1G47_03955) - 772590..773345 (+) 756 WP_021112098.1 ABC transporter permease -
  J1G47_RS03960 (J1G47_03960) - 773438..773875 (-) 438 WP_005712689.1 type II toxin-antitoxin system HicB family antitoxin -
  J1G47_RS03965 (J1G47_03965) - 773905..774090 (-) 186 WP_005712688.1 type II toxin-antitoxin system HicA family toxin -
  J1G47_RS03970 (J1G47_03970) sbcB 774458..776008 (+) 1551 WP_075592516.1 exodeoxyribonuclease I Machinery gene
  J1G47_RS03975 (J1G47_03975) - 776091..777050 (+) 960 WP_075592515.1 S-adenosyl-l-methionine hydroxide adenosyltransferase family protein -
  J1G47_RS03980 (J1G47_03980) - 777199..778020 (+) 822 WP_160404892.1 PHP domain-containing protein -
  J1G47_RS03985 (J1G47_03985) ilvN 778126..778617 (-) 492 WP_160402719.1 acetolactate synthase small subunit -
  J1G47_RS03990 (J1G47_03990) - 778610..780331 (-) 1722 WP_112063031.1 acetolactate synthase 3 large subunit -

Sequence

Protein


Download         Length: 516 a.a.        Molecular weight: 58837.00 Da        Isoelectric Point: 5.5315

>NTDB_id=477156 J1G47_RS03970 WP_075592516.1 774458..776008(+) (sbcB) [Glaesserella parasuis strain YHP1818]
MVQTTFFIYDYESFGVDPATDRPAQFAGIRTDSDFNIIGEPVMFYCQQTEDYLPSPEAVMVTGITPQLCNQQGLPEPEFA
ARIHAEFSQPNTCVMGYNNIRYDDEMTRYTFFRNFFDPYEYSWKNGNSRWDLLDVVRACYALRPEGIEWAYDDEGMPSFK
LENLTKANGIAHDNAHDAMADVYATIAMAKLIKQKQPKLFDFFLQNRGKKALEEMIDVGEMTPLVHVSGMLGNYRGNTAW
VVPLAWHPTNRNAVIVCDLSGNINDLLNEPSEILRERLYTKKVELEAQGLYAVPLKLVHINKCPILAPAKTLLSENATRL
GIDRLACLENLKRLKSQKNLVREKVLDIFSEERNYPTSNNIETTLYDGFFEPADKNNMAILRSLKPEELAHHGLKFSDPR
IEPLLFHYRARHYAETLTRAEQVRWQKYCYQQLEAKAEAFEQALDLLSAQYHDNSEKIKLLTDLTAYAAQLMQPKATKSV
NSPASELLVSELNQLADQGLSKADKLKAIGALLNKK

Nucleotide


Download         Length: 1551 bp        

>NTDB_id=477156 J1G47_RS03970 WP_075592516.1 774458..776008(+) (sbcB) [Glaesserella parasuis strain YHP1818]
ATGGTTCAAACCACCTTTTTTATTTACGATTACGAAAGTTTTGGTGTCGATCCTGCTACAGATCGTCCTGCACAATTTGC
AGGGATCCGCACCGATAGCGATTTCAACATTATCGGTGAACCCGTGATGTTCTACTGCCAACAAACAGAAGATTATTTGC
CTTCACCAGAAGCTGTGATGGTAACAGGGATTACACCACAGCTTTGTAATCAACAAGGGCTACCTGAACCTGAATTTGCC
GCTCGTATTCACGCCGAATTTAGCCAACCTAACACCTGCGTAATGGGATATAACAACATTCGCTATGATGATGAAATGAC
CCGTTATACCTTTTTCCGCAATTTTTTCGATCCTTATGAATATAGCTGGAAAAACGGCAATTCTCGTTGGGATCTTCTTG
ATGTTGTGCGTGCCTGTTATGCTTTACGTCCAGAAGGGATAGAATGGGCGTATGATGATGAAGGTATGCCGAGCTTTAAA
TTAGAAAATTTGACCAAAGCAAATGGTATTGCTCACGACAACGCTCACGATGCAATGGCTGATGTGTATGCTACTATTGC
AATGGCAAAGTTAATCAAACAAAAACAACCTAAATTATTCGACTTTTTCCTGCAAAATCGAGGTAAAAAAGCCCTAGAAG
AGATGATTGATGTCGGTGAAATGACACCGCTTGTTCACGTTTCTGGAATGTTAGGCAACTATCGAGGTAACACCGCTTGG
GTTGTGCCATTGGCTTGGCATCCGACTAATCGAAACGCAGTGATTGTATGTGATCTATCGGGGAATATAAACGACCTATT
GAATGAGCCAAGCGAAATATTGCGTGAACGTCTTTATACCAAAAAAGTAGAATTAGAAGCTCAAGGGCTTTATGCTGTTC
CACTAAAACTCGTGCATATTAATAAATGCCCAATTTTAGCTCCAGCCAAAACGTTACTGTCTGAAAATGCAACACGTTTA
GGCATTGATCGTCTAGCCTGTTTAGAAAATTTAAAACGGCTAAAATCACAAAAAAACCTTGTGCGAGAAAAGGTTCTCGA
TATTTTTTCTGAAGAAAGAAACTATCCAACGTCAAATAATATAGAAACCACGTTATACGATGGCTTTTTTGAACCTGCAG
ATAAAAACAATATGGCAATCTTACGAAGCCTAAAACCTGAAGAGCTTGCACATCACGGTTTGAAATTTAGCGATCCTAGA
ATTGAGCCTCTGCTTTTCCATTATCGAGCAAGACACTACGCAGAAACCTTAACACGGGCAGAACAAGTACGTTGGCAAAA
GTATTGCTATCAACAACTTGAAGCAAAAGCAGAGGCCTTTGAACAAGCACTTGATCTGTTATCGGCTCAATATCACGATA
ATTCTGAAAAGATAAAATTATTGACGGATCTCACCGCTTACGCAGCACAATTAATGCAGCCTAAAGCCACCAAATCCGTC
AATTCACCAGCTTCAGAGCTATTAGTATCGGAATTAAATCAACTTGCTGATCAAGGGCTGAGTAAAGCGGATAAATTAAA
AGCGATTGGGGCTTTGCTTAATAAAAAATAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(207-469)

Exonuclease (RNase_T)

(8-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

56.29

90.891

0.512