Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   H7793_RS01425 Genome accession   NZ_CP060642
Coordinates   267481..268551 (+) Length   356 a.a.
NCBI ID   WP_136021627.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain TSPY1312     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 262481..273551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7793_RS01410 (H7793_01415) amiA 263009..264979 (+) 1971 WP_024623426.1 peptide ABC transporter substrate-binding protein Regulator
  H7793_RS01415 (H7793_01420) amiC 265044..266546 (+) 1503 WP_228629706.1 ABC transporter permease Regulator
  H7793_RS01420 (H7793_01425) amiD 266546..267472 (+) 927 WP_002986004.1 oligopeptide ABC transporter permease OppC Regulator
  H7793_RS01425 (H7793_01430) amiE 267481..268551 (+) 1071 WP_136021627.1 ABC transporter ATP-binding protein Regulator
  H7793_RS01430 (H7793_01435) amiF 268544..269467 (+) 924 WP_002986000.1 ABC transporter ATP-binding protein Regulator
  H7793_RS09200 (H7793_01440) - 269505..269594 (-) 90 WP_110002794.1 IS3 family transposase -
  H7793_RS01435 (H7793_01445) - 269615..269860 (-) 246 WP_030126956.1 hypothetical protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 39763.87 Da        Isoelectric Point: 5.7015

>NTDB_id=477135 H7793_RS01425 WP_136021627.1 267481..268551(+) (amiE) [Streptococcus pyogenes strain TSPY1312]
MTKENNVILTAKDVVVEFDVRDRILTAIRNVSLELVEGEVLAFVGESGSGKSVLTKTFTGMLESNGRIANGSIVYRGQEL
TDLKTNKEWAKIRGSKIATIFQDPMTSLSPIKTIGRQITEVIIKHQKVSNAKAKEMALDYMNKVGIPNAKKRFEDYPFEY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIVELLKSLQREYHFTIIFITHDLGVVASIADKVAVMYAGEIVE
FGTVEEIFYDPRHPYTWSLLSSLPQLADESGELYAIPGTPPSLYSPIIGDAFALRSEYAMVLDFEKAPPAINVSETHWAK
TWLLHPEAPKVQKPEVIQDLHQKILRKMSQQEEGNV

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=477135 H7793_RS01425 WP_136021627.1 267481..268551(+) (amiE) [Streptococcus pyogenes strain TSPY1312]
ATGACAAAAGAAAATAATGTAATCTTAACTGCCAAAGATGTGGTGGTAGAATTTGATGTGCGTGATCGTATTTTAACAGC
TATCCGTAACGTCTCACTGGAACTTGTTGAAGGAGAAGTCCTTGCTTTTGTAGGGGAATCAGGCTCAGGTAAATCTGTTT
TAACAAAGACCTTTACAGGGATGTTGGAGTCTAATGGACGCATTGCTAATGGTTCAATTGTCTATCGTGGGCAAGAATTG
ACAGATTTAAAAACAAATAAAGAGTGGGCAAAGATTCGCGGCTCAAAAATCGCAACGATTTTCCAAGACCCAATGACCAG
TCTTAGTCCCATTAAAACTATCGGTAGACAAATCACAGAAGTGATTATTAAGCACCAAAAAGTAAGTAATGCCAAAGCTA
AAGAAATGGCCCTTGATTACATGAATAAAGTGGGTATCCCAAATGCCAAAAAACGCTTTGAAGATTACCCATTTGAGTAT
TCAGGAGGAATGCGTCAACGTATTGTTATCGCTATTGCTTTAGCTTGTCGCCCAGATATTCTTATCTGTGATGAGCCAAC
AACAGCCCTTGATGTGACTATTCAAGCTCAAATCGTTGAGTTATTGAAGTCGCTTCAACGAGAATATCATTTCACCATTA
TCTTTATTACGCACGATTTAGGTGTTGTGGCAAGCATTGCAGATAAAGTGGCTGTCATGTATGCAGGAGAAATTGTTGAA
TTTGGAACAGTCGAAGAGATTTTCTATGATCCAAGACACCCCTATACATGGAGTTTGCTGTCTAGCTTACCGCAGTTGGC
AGATGAATCTGGTGAACTTTACGCTATTCCAGGAACGCCTCCATCACTTTATTCACCAATTATCGGAGATGCCTTTGCAC
TTCGCTCAGAATATGCTATGGTTTTAGACTTTGAAAAAGCACCTCCGGCGATTAACGTATCTGAGACTCATTGGGCCAAA
ACATGGCTTTTACACCCAGAGGCTCCAAAAGTTCAAAAACCAGAAGTTATTCAAGATTTGCATCAAAAAATCTTAAGGAA
AATGTCACAACAGGAGGAAGGAAATGTCTGA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-299)

ABC transporter (ABC_tran)

(29-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

76.111

100

0.77
  amiE Streptococcus thermophilus LMG 18311

75

100

0.758
  amiE Streptococcus thermophilus LMD-9

75

100

0.758
  oppD Streptococcus mutans UA159

56.677

94.663

0.537