Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LLH_RS11445 Genome accession   NC_017492
Coordinates   2213850..2215211 (-) Length   453 a.a.
NCBI ID   WP_014573313.1    Uniprot ID   -
Organism   Lactococcus cremoris subsp. cremoris A76     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2208850..2220211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLH_RS11410 (llh_11970) - 2208951..2209274 (-) 324 WP_011677132.1 DUF1048 domain-containing protein -
  LLH_RS11415 (llh_11975) - 2209271..2209609 (-) 339 WP_014573310.1 DUF1048 domain-containing protein -
  LLH_RS11420 (llh_11980) - 2209602..2209958 (-) 357 WP_011677134.1 PadR family transcriptional regulator -
  LLH_RS11425 (llh_11985) - 2210080..2210709 (-) 630 WP_011677135.1 hypothetical protein -
  LLH_RS11430 (llh_11990) - 2210767..2211852 (-) 1086 WP_014573311.1 PIN/TRAM domain-containing protein -
  LLH_RS11435 (llh_11995) - 2212119..2212802 (+) 684 WP_014573312.1 YoaK family protein -
  LLH_RS11440 (llh_12000) - 2212859..2213749 (+) 891 WP_014573048.1 IS982-like element IS982B family transposase -
  LLH_RS11445 (llh_12005) radA 2213850..2215211 (-) 1362 WP_014573313.1 DNA repair protein RadA Machinery gene
  LLH_RS14590 (llh_12010) - 2215452..2216393 (-) 942 WP_014573314.1 glycosyltransferase family 2 protein -
  LLH_RS11455 (llh_12015) - 2216375..2216920 (-) 546 WP_011677141.1 HAD-IIIA family hydrolase -
  LLH_RS11460 (llh_12020) - 2216917..2217492 (-) 576 WP_011677142.1 SIS domain-containing protein -
  LLH_RS11465 (llh_12025) - 2217554..2218348 (-) 795 WP_014573315.1 GHMP kinase -
  LLH_RS11470 (llh_12030) - 2218557..2219435 (-) 879 WP_259285564.1 lipopolysaccharide biosynthesis protein -
  LLH_RS13945 (llh_12035) - 2219551..2219718 (+) 168 Protein_2216 IS982 family transposase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49882.32 Da        Isoelectric Point: 5.1748

>NTDB_id=47705 LLH_RS11445 WP_014573313.1 2213850..2215211(-) (radA) [Lactococcus cremoris subsp. cremoris A76]
MAKKKSSFVCQNCGYKSAKYLGRCPNCGEWSSFVEEVEVQEVKNQRVSMSGERSKPMILDEVELFDTPRIETDLDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLASRGRVLYVSGEESAQQIKLRAERLGDIDRDFYLYAETNMQSIRAEVE
RLKPNFLIIDSIQTIMTPEIQSTQGSVSQVREVTGELMQIAKTNDIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
NNTFRILRAVKNRFGSTNEIGIFEMQGHGLVEVTNPSEVFLEERLEGSTGSAIVCALEGTRPILVEIQALTTPTMFGNAK
RTTSGLDFNRVSLIMAVLEKRTGLLMQNQDAYLKSAGGVKLDEPAIDLAVAVAVASSYKELPTDARECFIGEIGLTGEIR
RVTRIEQRLNEAAKLGFKKVYAPKNSIVGIDIPEQIKVIGVTTLTECLKLVFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=47705 LLH_RS11445 WP_014573313.1 2213850..2215211(-) (radA) [Lactococcus cremoris subsp. cremoris A76]
ATGGCGAAGAAAAAATCATCTTTTGTTTGTCAAAATTGTGGTTATAAATCTGCAAAGTATCTTGGGCGATGCCCAAATTG
TGGAGAGTGGTCCTCTTTTGTTGAAGAAGTTGAAGTACAGGAAGTCAAAAATCAGCGAGTGTCGATGTCTGGTGAACGTT
CAAAACCAATGATATTAGATGAAGTTGAGCTTTTTGATACACCACGTATTGAAACAGATCTTGACGAATTTAATCGTGTT
TTAGGTGGTGGTGTTGTTCCTGGTTCACTCGTTTTGATTGGTGGAGACCCAGGAATAGGAAAATCTACGTTGCTTTTGCA
AGTATCGACTCAGCTTGCATCAAGAGGACGGGTTCTCTATGTGAGTGGTGAAGAATCTGCTCAACAAATTAAGCTTAGAG
CGGAACGTTTGGGCGATATTGATCGAGATTTTTATCTTTACGCCGAGACTAACATGCAGTCAATTCGTGCTGAAGTTGAA
CGTTTGAAGCCAAATTTTTTGATTATTGATTCGATCCAAACTATTATGACACCTGAAATTCAATCAACTCAAGGCTCTGT
GAGTCAAGTTCGAGAAGTGACAGGTGAACTCATGCAAATTGCCAAAACGAATGATATTGCTACTTTTATCGTTGGTCATG
TGACGAAAGAAGGTCAATTGGCAGGACCAAGAATGCTAGAGCACATGGTTGATACCGTTCTTTATTTTGAAGGAGAAAGA
AATAATACTTTTAGAATTCTTCGAGCAGTTAAAAACCGGTTTGGGTCAACCAATGAAATTGGTATATTCGAAATGCAAGG
GCATGGTTTAGTTGAAGTAACTAATCCTTCTGAGGTTTTCTTGGAAGAGCGATTAGAGGGTTCAACTGGTTCTGCTATTG
TTTGTGCACTCGAAGGGACACGTCCGATATTAGTTGAAATACAGGCTTTAACTACACCAACAATGTTTGGAAATGCTAAG
AGAACAACTTCTGGTTTAGATTTTAATAGAGTGAGCCTGATTATGGCAGTACTTGAAAAACGGACAGGCTTATTGATGCA
AAATCAAGATGCTTACCTTAAATCAGCTGGGGGAGTAAAATTAGATGAGCCAGCCATTGACCTTGCGGTTGCTGTCGCTG
TAGCCTCAAGTTATAAAGAACTTCCGACGGATGCGCGTGAATGTTTTATTGGTGAAATTGGCTTAACAGGAGAGATTCGT
CGTGTGACGCGAATTGAACAAAGACTGAATGAAGCTGCTAAATTAGGATTCAAAAAAGTCTATGCTCCTAAAAATTCAAT
TGTGGGAATTGATATTCCTGAACAAATAAAAGTAATTGGGGTAACAACCCTAACTGAATGTCTAAAATTAGTATTTGGCT
AA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

AAA domain (AAA_25)

(73-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

80.795

100

0.808
  radA Streptococcus pneumoniae D39

80.795

100

0.808
  radA Streptococcus pneumoniae R6

80.795

100

0.808
  radA Streptococcus pneumoniae TIGR4

80.795

100

0.808
  radA Streptococcus mitis SK321

80.795

100

0.808
  radA Streptococcus mitis NCTC 12261

80.574

100

0.806
  radA Bacillus subtilis subsp. subtilis str. 168

61.707

100

0.623

Multiple sequence alignment