Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   J1F34_RS05525 Genome accession   NZ_CP071441
Coordinates   1138854..1140281 (+) Length   475 a.a.
NCBI ID   WP_000980600.1    Uniprot ID   -
Organism   Escherichia coli strain EcPF20     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1133854..1145281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1F34_RS05485 (J1F34_05485) yeeW 1134038..1134232 (+) 195 WP_000988600.1 DUF5983 family protein -
  J1F34_RS05490 (J1F34_05490) - 1134278..1134358 (+) 81 Protein_1093 hypothetical protein -
  J1F34_RS24890 (J1F34_05495) - 1134647..1134820 (-) 174 WP_071592185.1 transposase domain-containing protein -
  J1F34_RS24895 (J1F34_05500) - 1134847..1135029 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  J1F34_RS05505 (J1F34_05505) tmaR 1135130..1135459 (-) 330 WP_000450409.1 DUF496 family protein -
  J1F34_RS05510 (J1F34_05510) yeeA 1135631..1136689 (-) 1059 WP_029364112.1 FUSC family protein -
  J1F34_RS05515 (J1F34_05515) sbmC 1136887..1137360 (-) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -
  J1F34_RS05520 (J1F34_05520) dacD 1137479..1138645 (-) 1167 WP_000830156.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  J1F34_RS05525 (J1F34_05525) sbcB 1138854..1140281 (+) 1428 WP_000980600.1 exodeoxyribonuclease I Machinery gene
  J1F34_RS05530 (J1F34_05530) tsuB 1140324..1140551 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  J1F34_RS05535 (J1F34_05535) tsuA 1140565..1141623 (-) 1059 WP_000492330.1 thiosulfate utilization transporter TsuA/YeeE -
  J1F34_RS05540 (J1F34_05540) plaP 1141802..1143160 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  J1F34_RS05545 (J1F34_05545) yoeI 1143150..1143212 (-) 63 WP_010723108.1 membrane protein YoeI -
  J1F34_RS05550 (J1F34_05550) yeeY 1143427..1144356 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  J1F34_RS05555 (J1F34_05555) yeeZ 1144402..1145226 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54416.65 Da        Isoelectric Point: 5.2420

>NTDB_id=476980 J1F34_RS05525 WP_000980600.1 1138854..1140281(+) (sbcB) [Escherichia coli strain EcPF20]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREEVVAIFAEAEPFTPSDNVDAQLYSGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=476980 J1F34_RS05525 WP_000980600.1 1138854..1140281(+) (sbcB) [Escherichia coli strain EcPF20]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCAGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACTGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAGAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAGTGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTTGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579