Detailed information
Bioinformatically predicted
Overview
| Name | radA | Type | Machinery gene |
| Locus tag | H7797_RS01160 | Genome accession | NZ_CP060639 |
| Coordinates | 209867..211228 (+) | Length | 453 a.a. |
| NCBI ID | WP_111693002.1 | Uniprot ID | - |
| Organism | Streptococcus pyogenes strain TSPY153 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 174269..209786 | 209867..211228 | flank | 81 |
Gene organization within MGE regions
Location: 174269..211228
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H7797_RS01000 (H7797_01000) | - | 174269..175465 (+) | 1197 | WP_002986345.1 | glycine betaine/L-proline ABC transporter ATP-binding protein | - |
| H7797_RS01005 (H7797_01005) | - | 175481..177208 (+) | 1728 | WP_111692994.1 | ABC transporter permease/substrate binding protein | - |
| H7797_RS01010 (H7797_01010) | polA | 177339..179981 (+) | 2643 | WP_111692995.1 | DNA polymerase I | - |
| H7797_RS01015 (H7797_01015) | - | 180168..180623 (+) | 456 | WP_002986334.1 | CoA-binding protein | - |
| H7797_RS01020 (H7797_01020) | perR | 180675..181142 (+) | 468 | WP_002986328.1 | peroxide-responsive transcriptional repressor PerR | - |
| H7797_RS01025 (H7797_01025) | - | 181362..181598 (+) | 237 | WP_015055907.1 | hypothetical protein | - |
| H7797_RS01030 (H7797_01030) | - | 181820..183154 (+) | 1335 | WP_111692996.1 | phosphoadenosine phosphosulfate reductase | - |
| H7797_RS01035 (H7797_01035) | - | 183147..183677 (+) | 531 | WP_002987925.1 | IbrB-like domain-containing protein | - |
| H7797_RS01040 (H7797_01040) | - | 183724..183873 (-) | 150 | Protein_159 | ISL3 family transposase | - |
| H7797_RS01045 (H7797_01045) | - | 184005..185155 (-) | 1151 | Protein_160 | IS3 family transposase | - |
| H7797_RS01050 (H7797_01050) | - | 185233..186543 (-) | 1311 | WP_111692997.1 | SLC13 family permease | - |
| H7797_RS01055 (H7797_01055) | nadC | 186767..187639 (+) | 873 | WP_010921848.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| H7797_RS01065 (H7797_01065) | - | 189367..190230 (-) | 864 | WP_011888568.1 | DUF975 family protein | - |
| H7797_RS09860 | - | 190267..190452 (+) | 186 | WP_002986321.1 | hypothetical protein | - |
| H7797_RS01070 (H7797_01070) | tgt | 190449..191591 (+) | 1143 | WP_011528208.1 | tRNA guanosine(34) transglycosylase Tgt | - |
| H7797_RS01075 (H7797_01075) | - | 191808..192149 (+) | 342 | WP_111692998.1 | CHY zinc finger protein | - |
| H7797_RS01080 (H7797_01080) | - | 192124..192663 (+) | 540 | WP_014407272.1 | biotin transporter BioY | - |
| H7797_RS01085 (H7797_01085) | - | 192803..193582 (+) | 780 | WP_111692999.1 | MBL fold metallo-hydrolase | - |
| H7797_RS01090 (H7797_01090) | tadA | 193582..194097 (+) | 516 | WP_030126469.1 | tRNA adenosine(34) deaminase TadA | - |
| H7797_RS01095 (H7797_01095) | - | 194711..195943 (-) | 1233 | WP_009880892.1 | transglutaminase domain-containing protein | - |
| H7797_RS01105 (H7797_01105) | speG | 196343..197047 (+) | 705 | WP_111693000.1 | streptococcal pyrogenic exotoxin SpeG | - |
| H7797_RS01110 (H7797_01110) | - | 197502..198851 (+) | 1350 | WP_014635263.1 | glucose-6-phosphate isomerase | - |
| H7797_RS01115 (H7797_01115) | - | 199198..200706 (-) | 1509 | WP_023079312.1 | helix-turn-helix domain-containing protein | - |
| H7797_RS01120 (H7797_01120) | - | 201394..202065 (+) | 672 | WP_011017305.1 | rhomboid family intramembrane serine protease | - |
| H7797_RS01125 (H7797_01125) | galU | 202164..203063 (-) | 900 | WP_002986125.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| H7797_RS01130 (H7797_01130) | - | 203096..204112 (-) | 1017 | WP_111685652.1 | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase | - |
| H7797_RS01135 (H7797_01135) | - | 204410..204859 (+) | 450 | WP_002986120.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| H7797_RS01140 (H7797_01140) | - | 204852..206558 (+) | 1707 | WP_010921864.1 | ABC transporter ATP-binding protein | - |
| H7797_RS01145 (H7797_01145) | - | 206561..208345 (+) | 1785 | WP_002992923.1 | ABC transporter ATP-binding protein | - |
| H7797_RS01150 (H7797_01150) | - | 208463..209230 (+) | 768 | WP_002986113.1 | epoxyqueuosine reductase QueH | - |
| H7797_RS01155 (H7797_01155) | - | 209340..209786 (+) | 447 | WP_002986111.1 | dUTP diphosphatase | - |
| H7797_RS01160 (H7797_01160) | radA | 209867..211228 (+) | 1362 | WP_111693002.1 | DNA repair protein RadA | Machinery gene |
Sequence
Protein
Download Length: 453 a.a. Molecular weight: 49382.69 Da Isoelectric Point: 6.0962
>NTDB_id=476969 H7797_RS01160 WP_111693002.1 209867..211228(+) (radA) [Streptococcus pyogenes strain TSPY153]
MAKKKATFICQECGYQSPKYLGRCPNCSAWSSFVEEVEVKEVKNARVSLAGEKSRPVKLKDVDNISYHRTQTDMSEFNRV
LGGGVVPGSLILIGGDPGIGKSTLLLQVSTQLANKGPVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAIRTEIE
NIKPDFLIIDSIQTIMSPDITGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAVVVTMEGSRPILAEVQSLVTPTVFGNAR
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTSPQEAFLGEIGLTGEIR
RVTRIEQRINEAAKLGFTKVYAPKNALQGIDIPQGIEVVGVTTVGQVLKAVFS
MAKKKATFICQECGYQSPKYLGRCPNCSAWSSFVEEVEVKEVKNARVSLAGEKSRPVKLKDVDNISYHRTQTDMSEFNRV
LGGGVVPGSLILIGGDPGIGKSTLLLQVSTQLANKGPVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAIRTEIE
NIKPDFLIIDSIQTIMSPDITGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAVVVTMEGSRPILAEVQSLVTPTVFGNAR
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTSPQEAFLGEIGLTGEIR
RVTRIEQRINEAAKLGFTKVYAPKNALQGIDIPQGIEVVGVTTVGQVLKAVFS
Nucleotide
Download Length: 1362 bp
>NTDB_id=476969 H7797_RS01160 WP_111693002.1 209867..211228(+) (radA) [Streptococcus pyogenes strain TSPY153]
ATGGCAAAGAAAAAAGCAACCTTTATCTGTCAGGAGTGTGGCTACCAGTCGCCAAAGTATTTAGGGCGCTGTCCAAATTG
CTCGGCCTGGTCTTCTTTTGTGGAAGAAGTAGAGGTCAAAGAAGTCAAAAATGCCCGTGTTAGTCTAGCTGGAGAAAAGT
CCAGACCGGTTAAACTAAAAGATGTGGATAATATTAGTTATCACAGAACACAGACTGACATGTCTGAATTTAATAGAGTT
CTTGGAGGGGGTGTGGTTCCTGGAAGCTTGATTTTAATTGGTGGTGATCCAGGTATTGGAAAATCCACCTTACTCTTGCA
GGTATCCACGCAGCTCGCTAATAAGGGACCGGTTCTCTATGTGTCTGGGGAAGAATCAGCAGAGCAGATTAAACTGCGGA
GTGAGCGTCTGGGTGATATTGACAATGAATTTTACCTCTATGCCGAAACCAATATGCAAGCTATTCGCACAGAAATTGAA
AATATTAAACCAGATTTTTTAATTATTGACTCCATTCAGACCATCATGAGCCCTGATATTACAGGTGTTCAAGGATCAGT
CAGTCAGGTGAGAGAAGTCACTGCAGAATTGATGCAGCTTGCAAAGACGAACAACATTGCAACCTTTATTGTGGGTCATG
TCACCAAGGAAGGAACCTTGGCTGGGCCTCGTATGTTAGAACACATGGTGGATACCGTTCTCTACTTTGAAGGGGAAAGG
CATCACACCTTTCGCATTCTTCGGGCTGTGAAAAACCGCTTTGGCTCCACTAACGAGATCGGCATCTTTGAAATGCAGTC
TGGCGGCTTGGTAGAGGTCTTAAATCCTAGTCAAGTCTTTTTAGAGGAACGCTTAGATGGGGCAACAGGATCGGCTGTCG
TTGTAACGATGGAAGGAAGTCGTCCTATCTTAGCAGAGGTGCAATCTTTAGTGACACCAACCGTTTTTGGCAATGCCAGA
CGAACCACTACGGGACTTGATTTCAATCGCGTAAGCCTAATAATGGCAGTTTTAGAAAAGCGCTGTGGTTTACTCTTACA
AAATCAAGATGCCTACCTCAAGTCGGCTGGTGGTGTCAAACTAGACGAACCTGCCATTGATTTGGCAGTCGCTGTGGCTA
TCGCATCCAGTTATAAGGAAAAACCAACCAGCCCTCAAGAAGCTTTCTTAGGCGAGATCGGGTTAACAGGTGAGATTCGG
CGAGTGACCCGTATTGAGCAACGGATTAATGAAGCAGCAAAGCTTGGCTTTACCAAGGTCTATGCTCCTAAAAATGCCTT
GCAAGGCATTGATATCCCTCAAGGTATTGAGGTTGTCGGAGTGACTACGGTTGGTCAGGTTTTAAAGGCAGTTTTTAGCT
AG
ATGGCAAAGAAAAAAGCAACCTTTATCTGTCAGGAGTGTGGCTACCAGTCGCCAAAGTATTTAGGGCGCTGTCCAAATTG
CTCGGCCTGGTCTTCTTTTGTGGAAGAAGTAGAGGTCAAAGAAGTCAAAAATGCCCGTGTTAGTCTAGCTGGAGAAAAGT
CCAGACCGGTTAAACTAAAAGATGTGGATAATATTAGTTATCACAGAACACAGACTGACATGTCTGAATTTAATAGAGTT
CTTGGAGGGGGTGTGGTTCCTGGAAGCTTGATTTTAATTGGTGGTGATCCAGGTATTGGAAAATCCACCTTACTCTTGCA
GGTATCCACGCAGCTCGCTAATAAGGGACCGGTTCTCTATGTGTCTGGGGAAGAATCAGCAGAGCAGATTAAACTGCGGA
GTGAGCGTCTGGGTGATATTGACAATGAATTTTACCTCTATGCCGAAACCAATATGCAAGCTATTCGCACAGAAATTGAA
AATATTAAACCAGATTTTTTAATTATTGACTCCATTCAGACCATCATGAGCCCTGATATTACAGGTGTTCAAGGATCAGT
CAGTCAGGTGAGAGAAGTCACTGCAGAATTGATGCAGCTTGCAAAGACGAACAACATTGCAACCTTTATTGTGGGTCATG
TCACCAAGGAAGGAACCTTGGCTGGGCCTCGTATGTTAGAACACATGGTGGATACCGTTCTCTACTTTGAAGGGGAAAGG
CATCACACCTTTCGCATTCTTCGGGCTGTGAAAAACCGCTTTGGCTCCACTAACGAGATCGGCATCTTTGAAATGCAGTC
TGGCGGCTTGGTAGAGGTCTTAAATCCTAGTCAAGTCTTTTTAGAGGAACGCTTAGATGGGGCAACAGGATCGGCTGTCG
TTGTAACGATGGAAGGAAGTCGTCCTATCTTAGCAGAGGTGCAATCTTTAGTGACACCAACCGTTTTTGGCAATGCCAGA
CGAACCACTACGGGACTTGATTTCAATCGCGTAAGCCTAATAATGGCAGTTTTAGAAAAGCGCTGTGGTTTACTCTTACA
AAATCAAGATGCCTACCTCAAGTCGGCTGGTGGTGTCAAACTAGACGAACCTGCCATTGATTTGGCAGTCGCTGTGGCTA
TCGCATCCAGTTATAAGGAAAAACCAACCAGCCCTCAAGAAGCTTTCTTAGGCGAGATCGGGTTAACAGGTGAGATTCGG
CGAGTGACCCGTATTGAGCAACGGATTAATGAAGCAGCAAAGCTTGGCTTTACCAAGGTCTATGCTCCTAAAAATGCCTT
GCAAGGCATTGATATCCCTCAAGGTATTGAGGTTGTCGGAGTGACTACGGTTGGTCAGGTTTTAAAGGCAGTTTTTAGCT
AG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radA | Streptococcus mitis NCTC 12261 |
85.651 |
100 |
0.857 |
| radA | Streptococcus pneumoniae D39 |
85.43 |
100 |
0.854 |
| radA | Streptococcus pneumoniae R6 |
85.43 |
100 |
0.854 |
| radA | Streptococcus pneumoniae Rx1 |
85.43 |
100 |
0.854 |
| radA | Streptococcus mitis SK321 |
85.43 |
100 |
0.854 |
| radA | Streptococcus pneumoniae TIGR4 |
85.43 |
100 |
0.854 |
| radA | Bacillus subtilis subsp. subtilis str. 168 |
61.369 |
100 |
0.614 |