Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   J1F19_RS12960 Genome accession   NZ_CP071439
Coordinates   2715542..2716210 (-) Length   222 a.a.
NCBI ID   WP_001297375.1    Uniprot ID   P65957
Organism   Escherichia coli strain EcPNK004     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2710542..2721210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1F19_RS12930 (J1F19_12930) rfaQ 2710720..2711778 (-) 1059 WP_000360390.1 lipopolysaccharide core heptosyltransferase RfaQ -
  J1F19_RS12935 (J1F19_12935) waaA 2712191..2713468 (+) 1278 WP_000891574.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  J1F19_RS12940 (J1F19_12940) coaD 2713476..2713955 (+) 480 WP_001171873.1 pantetheine-phosphate adenylyltransferase -
  J1F19_RS12945 (J1F19_12945) mutM 2713994..2714803 (-) 810 WP_001586433.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  J1F19_RS12950 (J1F19_12950) rpmG 2714901..2715068 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  J1F19_RS12955 (J1F19_12955) rpmB 2715089..2715325 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  J1F19_RS12960 (J1F19_12960) radC 2715542..2716210 (-) 669 WP_001297375.1 DNA repair protein RadC Machinery gene
  J1F19_RS12965 (J1F19_12965) coaBC 2716382..2717602 (+) 1221 WP_000050153.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  J1F19_RS12970 (J1F19_12970) dut 2717580..2718038 (+) 459 WP_000976070.1 dUTP diphosphatase -
  J1F19_RS12975 (J1F19_12975) slmA 2718145..2718741 (+) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  J1F19_RS12980 (J1F19_12980) pyrE 2718778..2719419 (-) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  J1F19_RS12985 (J1F19_12985) rph 2719485..2720201 (-) 717 WP_001247093.1 ribonuclease PH -
  J1F19_RS12990 (J1F19_12990) yicC 2720328..2721191 (+) 864 WP_000621336.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25258.35 Da        Isoelectric Point: 7.9748

>NTDB_id=476927 J1F19_RS12960 WP_001297375.1 2715542..2716210(-) (radC) [Escherichia coli strain EcPNK004]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=476927 J1F19_RS12960 WP_001297375.1 2715542..2716210(-) (radC) [Escherichia coli strain EcPNK004]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACTGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGTGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTAGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGGGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAATGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65957

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496