Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   J1F19_RS11135 Genome accession   NZ_CP071439
Coordinates   2335684..2336808 (-) Length   374 a.a.
NCBI ID   WP_001551734.1    Uniprot ID   -
Organism   Escherichia coli strain EcPNK004     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2330684..2341808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1F19_RS11105 (J1F19_11105) yrdA 2332484..2333038 (+) 555 WP_001286217.1 gamma carbonic anhydrase family protein -
  J1F19_RS11110 (J1F19_11110) yrdB 2333014..2333271 (-) 258 WP_001070562.1 DUF1488 domain-containing protein -
  J1F19_RS11115 (J1F19_11115) aroE 2333268..2334086 (-) 819 WP_000451230.1 shikimate dehydrogenase -
  J1F19_RS11120 (J1F19_11120) tsaC 2334091..2334663 (-) 573 WP_001297709.1 L-threonylcarbamoyladenylate synthase type 1 TsaC -
  J1F19_RS11125 (J1F19_11125) yrdD 2334668..2335210 (-) 543 WP_001129723.1 type I DNA topoisomerase -
  J1F19_RS11130 (J1F19_11130) smg 2335239..2335712 (-) 474 WP_000460672.1 DUF494 family protein Smg -
  J1F19_RS11135 (J1F19_11135) dprA 2335684..2336808 (-) 1125 WP_001551734.1 DNA-protecting protein DprA Machinery gene
  J1F19_RS11140 (J1F19_11140) def 2336938..2337447 (+) 510 WP_000114984.1 peptide deformylase -
  J1F19_RS11145 (J1F19_11145) fmt 2337462..2338409 (+) 948 WP_000004443.1 methionyl-tRNA formyltransferase -
  J1F19_RS11150 (J1F19_11150) rsmB 2338455..2339744 (+) 1290 WP_001586319.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  J1F19_RS11155 (J1F19_11155) trkA 2339766..2341142 (+) 1377 WP_000691382.1 Trk system potassium transporter TrkA -
  J1F19_RS11160 (J1F19_11160) mscL 2341272..2341682 (+) 411 WP_000022442.1 large-conductance mechanosensitive channel protein MscL -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 40934.87 Da        Isoelectric Point: 6.3848

>NTDB_id=476920 J1F19_RS11135 WP_001551734.1 2335684..2336808(-) (dprA) [Escherichia coli strain EcPNK004]
MVDTEIWLRLMSISSLYGDDMVRIAHWLAKQSHIDAVVLQQTGLTLRQAQRFLSFPRKSIESSLSWLEQPNHHLIPADSE
FYPPQLLATTDYPGALFVAGELHALHSFQLAVVGSRAHSWYGERWGRLFCETLATRGVTITSGLARGIDGVAHKAALQVN
GVSIAVLGNGLNTIHPRRHARLATSLLEHGGALVSEFPLDVPPLAYNFPRRNRIISGLSKGVLVVEAALRSGSLVTARCA
LEQGREVFALPGPLGNPGSEGPHWLIKQGAILVTEPEEILENLQFGLHWLPDAPENSFYSPDQEDVALPFPELLANVGDE
VTPVDVVAERAGQPVPEVVTQLLELELAGWIAAVPGGYVRLRRACHVRRTNVFV

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=476920 J1F19_RS11135 WP_001551734.1 2335684..2336808(-) (dprA) [Escherichia coli strain EcPNK004]
ATGGTCGATACAGAAATTTGGCTGCGTTTAATGAGCATCAGCAGCTTGTACGGCGATGATATGGTCCGTATAGCTCACTG
GCTGGCAAAACAGTCGCATATTGATGCGGTTGTATTGCAGCAAACTGGGCTTACATTGCGGCAGGCACAACGCTTTCTTT
CATTTCCGCGAAAGAGTATCGAAAGCTCACTTTCTTGGTTGGAGCAACCCAACCATCATTTAATTCCTGCGGACAGCGAA
TTTTATCCTCCTCAACTTCTTGCGACGACAGATTACCCCGGCGCACTGTTTGTTGCAGGAGAACTGCACGCGCTGCATTC
ATTTCAGCTTGCCGTAGTGGGGAGTCGGGCGCATTCATGGTATGGCGAGCGATGGGGACGATTATTTTGCGAAACTCTGG
CGACGCGTGGAGTGACAATTACGAGTGGACTGGCGCGTGGAATCGATGGTGTGGCGCATAAAGCGGCCTTACAGGTAAAT
GGCGTCAGCATTGCTGTATTAGGGAATGGACTTAATACCATTCATCCGCGTCGCCATGCCCGACTGGCTACCAGTTTGCT
TGAACATGGTGGGGCTCTTGTCTCGGAATTTCCCCTCGATGTTCCTCCCCTTGCTTACAATTTCCCACGAAGAAATCGCA
TTATCAGTGGTCTAAGTAAAGGTGTACTGGTAGTGGAAGCGGCTTTGCGCAGTGGTTCGCTGGTGACAGCACGTTGTGCG
CTTGAGCAGGGGCGTGAAGTTTTTGCCTTGCCGGGTCCATTAGGGAATCCGGGAAGCGAAGGGCCTCACTGGTTAATAAA
ACAAGGTGCGATTCTTGTGACGGAACCGGAAGAAATTCTGGAAAACTTGCAATTTGGATTGCACTGGTTGCCAGACGCCC
CTGAAAATTCATTTTATTCACCAGATCAGGAAGACGTGGCATTGCCATTTCCTGAGCTCCTGGCTAACGTAGGAGATGAG
GTAACACCTGTTGACGTCGTCGCTGAACGTGCCGGCCAACCTGTGCCAGAGGTAGTAACTCAACTACTCGAACTGGAGTT
AGCAGGATGGATCGCAGCTGTACCCGGCGGCTATGTCCGATTGAGGAGGGCATGCCATGTTCGACGTACTAATGTATTTG
TTTGA

Domains

Predicted by InterProScan.

DprA winged helix domain (WHD_DprA)

(312-357)

DNA recombination-mediator protein A (DNA_processg_A)

(67-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

48.509

98.663

0.479
  dprA Glaesserella parasuis strain SC1401

44.807

90.107

0.404
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

48.387

82.888

0.401
  dprA Vibrio cholerae strain A1552

48.387

82.888

0.401
  dprA Haemophilus influenzae Rd KW20

43.917

90.107

0.396
  dprA Legionella pneumophila strain ERS1305867

43.363

90.642

0.393