Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB/pilB1   Type   Machinery gene
Locus tag   J1F19_RS09565 Genome accession   NZ_CP071439
Coordinates   2007656..2009149 (-) Length   497 a.a.
NCBI ID   WP_000249314.1    Uniprot ID   -
Organism   Escherichia coli strain EcPNK004     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2002656..2014149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1F19_RS09535 (J1F19_09535) gspK 2003450..2004427 (-) 978 WP_000633198.1 type II secretion system minor pseudopilin GspK -
  J1F19_RS09540 (J1F19_09540) gspJ 2004424..2005029 (-) 606 WP_001250454.1 type II secretion system minor pseudopilin GspJ -
  J1F19_RS09545 (J1F19_09545) gspI 2005026..2005397 (-) 372 WP_000820072.1 type II secretion system minor pseudopilin GspI -
  J1F19_RS09550 (J1F19_09550) gspH 2005394..2005957 (-) 564 WP_001115129.1 type II secretion system minor pseudopilin GspH -
  J1F19_RS09555 (J1F19_09555) gspG 2005961..2006416 (-) 456 WP_001087296.1 type II secretion system major pseudopilin GspG -
  J1F19_RS09560 (J1F19_09560) gspF 2006433..2007656 (-) 1224 WP_001173444.1 type II secretion system inner membrane protein GspF -
  J1F19_RS09565 (J1F19_09565) pilB/pilB1 2007656..2009149 (-) 1494 WP_000249314.1 type II secretion system ATPase GspE Machinery gene
  J1F19_RS09570 (J1F19_09570) gspD 2009149..2011209 (-) 2061 WP_000498830.1 type II secretion system secretin GspD -
  J1F19_RS09575 (J1F19_09575) gspC 2011239..2012198 (-) 960 WP_000135091.1 type II secretion system protein GspC -
  J1F19_RS09580 (J1F19_09580) gspS2 2012216..2012626 (-) 411 WP_001309757.1 type II secretion system pilot lipoprotein GspS-beta -
  J1F19_RS09585 (J1F19_09585) pilD 2012692..2013501 (-) 810 WP_000895878.1 prepilin peptidase PppA Machinery gene

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55170.30 Da        Isoelectric Point: 6.0089

>NTDB_id=476914 J1F19_RS09565 WP_000249314.1 2007656..2009149(-) (pilB/pilB1) [Escherichia coli strain EcPNK004]
MVPVAQETSANTVRLPYSFSRRFSLVAWCEASLEILHVHPLSLSVLQELQRGLNAPFTLRQIDEAEFEQRLNAVWQRDSS
EARQLMEDLGSAEDFFTLAEELPETEDLLESDDDAPIIKLINAMLAEAIKEGASDIHIETFEKSLVIRFRVDGTLHEMLR
PGRKLASLLVSRIKVMARLDIAEKRVPQDGRIALLLGGRAIDVRVSTMPSAWGERVVLRLLDKNQARLTLERLGLSHELT
AQLRQLLHKPHGIFLVTGPTGSGKSTTLYAGLQELNNHSRNILTVEDPIEYMIEGIGQTQVNTRVGMTFARGLRAILRQD
PDVVMVGEIRDTETAEIAVQASLTGHLVLSTLHTNTAVGAITRLQDMGVEPFLLSSSLAGVMAQRLVRTLCPDCRQPAPA
TDEEKRLLGITDARTVTLYHPQGCPACNHKGFRGRTAIHELIVVDATLRDLIHRQAGELELERYVRQHSAGIRSNGIEKV
LAGETSLDEVLRVTMEA

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=476914 J1F19_RS09565 WP_000249314.1 2007656..2009149(-) (pilB/pilB1) [Escherichia coli strain EcPNK004]
ATGGTGCCTGTAGCACAGGAAACCTCCGCTAACACCGTGCGTCTGCCCTACAGTTTCAGCCGCCGGTTTAGCCTGGTGGC
ATGGTGCGAAGCGTCGCTGGAGATCCTCCATGTTCATCCGTTGTCGCTCTCTGTTTTGCAGGAGCTGCAACGGGGGCTGA
ACGCGCCCTTTACGCTGCGGCAAATCGACGAGGCCGAATTTGAACAGCGGCTGAATGCGGTCTGGCAGCGGGACTCTTCC
GAAGCTCGCCAGTTGATGGAAGATCTCGGTTCCGCCGAGGACTTCTTTACCCTCGCAGAAGAGCTGCCAGAAACGGAAGA
TTTGCTGGAAAGTGACGACGATGCGCCGATCATCAAACTGATCAACGCCATGCTGGCAGAGGCAATTAAAGAAGGCGCTT
CGGATATCCACATTGAGACGTTTGAAAAGAGTCTGGTGATCCGTTTTCGTGTAGACGGAACGCTACATGAAATGCTGCGT
CCCGGGCGCAAACTAGCCTCGCTGCTGGTGTCGCGTATCAAGGTGATGGCGCGGCTGGACATTGCCGAAAAGCGCGTGCC
GCAGGATGGACGTATTGCGCTGCTGCTGGGCGGTCGGGCGATTGACGTGCGTGTCTCCACCATGCCTTCTGCCTGGGGCG
AGCGCGTGGTGCTGCGACTGCTGGACAAAAACCAGGCCCGCCTGACGCTGGAGCGTCTGGGGCTGAGTCATGAACTGACC
GCGCAGTTGCGCCAGCTACTGCACAAACCGCACGGTATCTTTCTGGTGACGGGGCCGACGGGTTCCGGCAAAAGCACCAC
GCTGTACGCCGGATTGCAGGAGCTGAACAACCATTCGCGCAACATTCTCACGGTTGAAGACCCCATCGAATACATGATTG
AAGGGATCGGTCAGACGCAGGTTAACACCCGCGTCGGCATGACCTTCGCCCGTGGCCTGCGCGCGATTTTGCGTCAGGAC
CCGGATGTGGTGATGGTCGGTGAAATCCGCGATACCGAAACCGCAGAAATTGCCGTCCAGGCATCGCTTACAGGGCACCT
GGTACTTTCCACGCTGCATACCAACACGGCGGTGGGGGCGATCACGCGTTTGCAGGATATGGGCGTCGAGCCTTTCCTGC
TCTCTTCCAGTCTGGCGGGCGTGATGGCGCAGCGGCTGGTTCGCACGCTGTGCCCCGACTGCCGCCAGCCCGCGCCTGCC
ACTGACGAAGAAAAACGCCTGCTGGGGATTACCGATGCGCGAACCGTCACTCTGTACCATCCGCAGGGCTGCCCCGCCTG
TAATCACAAAGGTTTTCGCGGACGTACTGCCATCCATGAACTGATTGTGGTGGACGCCACATTGCGTGATTTGATCCACC
GTCAGGCCGGGGAACTGGAGCTGGAACGTTATGTCCGGCAACACTCTGCGGGTATCCGCAGTAACGGCATTGAGAAAGTG
CTCGCCGGAGAAACCTCTCTCGATGAAGTTCTGCGGGTAACCATGGAGGCGTAA

Domains

Predicted by InterProScan.

Type II/IV secretion system protein (T2SSE)

(123-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB/pilB1 Synechocystis sp. PCC 6803

39.556

100

0.431
  pilB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

47.765

85.513

0.408
  pilB Vibrio parahaemolyticus RIMD 2210633

48.363

79.879

0.386
  pilB Vibrio campbellii strain DS40M4

47.475

79.678

0.378
  pilB Legionella pneumophila strain ERS1305867

43.387

86.72

0.376
  pilB Acinetobacter baumannii D1279779

46.617

80.282

0.374
  pilB Vibrio cholerae strain A1552

45.96

79.678

0.366
  pilF Thermus thermophilus HB27

45

80.483

0.362