Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   H9Q78_RS11605 Genome accession   NZ_CP060634
Coordinates   2491545..2492936 (+) Length   463 a.a.
NCBI ID   WP_249301889.1    Uniprot ID   A0A7G9G2P8
Organism   Qiania dongpingensis strain NSJ-38     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2486545..2497936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9Q78_RS11585 (H9Q78_11570) - 2486897..2487454 (+) 558 WP_249301884.1 UvrB/UvrC motif-containing protein -
  H9Q78_RS11590 (H9Q78_11575) - 2487441..2488478 (+) 1038 WP_249301885.1 ATP--guanido phosphotransferase -
  H9Q78_RS11595 (H9Q78_11580) - 2488496..2490940 (+) 2445 WP_249301886.1 ATP-dependent Clp protease ATP-binding subunit -
  H9Q78_RS11600 (H9Q78_11585) - 2491017..2491430 (+) 414 WP_249301888.1 endosialidase -
  H9Q78_RS11605 (H9Q78_11590) radA 2491545..2492936 (+) 1392 WP_249301889.1 DNA repair protein RadA Machinery gene
  H9Q78_RS11610 (H9Q78_11595) - 2492937..2493491 (-) 555 WP_249301890.1 manganese efflux pump -
  H9Q78_RS11615 (H9Q78_11600) - 2493583..2494434 (+) 852 WP_249301891.1 Cof-type HAD-IIB family hydrolase -
  H9Q78_RS11620 (H9Q78_11605) - 2494466..2497774 (+) 3309 WP_249301892.1 PAS domain-containing protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 49479.95 Da        Isoelectric Point: 5.6077

>NTDB_id=476874 H9Q78_RS11605 WP_249301889.1 2491545..2492936(+) (radA) [Qiania dongpingensis strain NSJ-38]
MAKARATVFFCKECGYESAKWMGQCPGCREWNTFVEAPTAKKASPARGLGAGSAGTGAAMERRPQKLSEIQSAMEARMST
GMEELDRVLGGGLVGGSLILVGGDPGIGKSTLLLQVCRNLAESGHKILYISGEESLSQIKLRADRLGTFSGELSFLCETS
LELISDVIIEERPEAVVIDSIQTMYREDAGTAPGSVGQVRESTNTLLQLAKGNDITIFIVGHVTKEGTVAGPRMLEHMVD
TVLYFEGERNASYRILRGVKNRFGSTNEIGVFEMRGDGLAEVPNPSEYMLSGKPVGASGSVTACSMEGTRPVLLEIQALV
CRTNFGMPRRTAAGTDYNRVNLLIAVLEKRAGLRLSDCDAYVNIAGGLKVNEPSLDLGIVMALASSHRDIPVDDSMMVFG
EVGLSGEVRAVSMVEKRVQEAAKLGFTSCVLPRVCLGRIQEPPAGLKLIGVGNVQEAIDLIAR

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=476874 H9Q78_RS11605 WP_249301889.1 2491545..2492936(+) (radA) [Qiania dongpingensis strain NSJ-38]
ATGGCAAAAGCGAGAGCAACGGTATTTTTCTGTAAGGAATGTGGATATGAATCCGCTAAATGGATGGGCCAGTGTCCTGG
GTGCCGGGAATGGAACACCTTTGTGGAAGCGCCTACTGCGAAGAAGGCGTCCCCGGCGAGAGGCCTGGGAGCCGGATCCG
CGGGTACAGGCGCCGCCATGGAAAGGCGTCCCCAGAAGCTGTCGGAGATCCAGTCGGCCATGGAGGCAAGGATGAGCACG
GGCATGGAGGAGCTGGACCGCGTTCTGGGAGGGGGGCTTGTAGGAGGTTCCCTGATTCTGGTGGGAGGAGATCCGGGCAT
CGGAAAGTCGACCCTCCTTCTCCAGGTATGCCGGAACCTGGCGGAATCAGGGCATAAGATCCTTTACATTTCCGGAGAAG
AATCTCTCAGCCAGATCAAGCTCAGGGCTGACAGGCTGGGGACCTTCAGCGGAGAGCTGTCTTTTTTGTGCGAGACCAGC
CTGGAGCTGATCTCGGATGTGATTATTGAGGAAAGGCCGGAGGCGGTGGTCATCGACTCTATTCAGACCATGTACCGGGA
GGATGCCGGCACCGCGCCGGGCAGCGTGGGGCAGGTCCGGGAATCCACGAATACGCTGCTCCAGCTGGCAAAGGGGAACG
ACATCACGATCTTCATCGTGGGACATGTTACCAAAGAAGGGACTGTGGCAGGGCCCAGGATGCTGGAGCATATGGTGGAT
ACGGTCCTTTATTTCGAAGGAGAGAGGAACGCTTCTTACCGGATTCTGCGTGGAGTGAAGAACCGGTTTGGATCCACCAA
TGAGATCGGAGTATTTGAGATGCGGGGAGACGGGCTTGCGGAGGTCCCGAATCCTTCCGAATATATGCTGAGCGGAAAAC
CGGTGGGGGCATCGGGATCTGTGACGGCCTGCTCCATGGAGGGGACAAGGCCTGTGCTTTTGGAGATCCAGGCTCTCGTC
TGCCGCACGAATTTCGGTATGCCCAGAAGGACGGCGGCCGGGACAGATTATAACCGTGTCAATCTGCTGATCGCTGTTTT
GGAAAAACGTGCAGGGCTTCGCCTTTCCGACTGTGACGCCTACGTGAATATAGCCGGAGGCCTTAAAGTCAATGAGCCTT
CTTTGGACCTGGGGATCGTCATGGCGCTGGCTTCCAGCCACCGGGACATTCCGGTGGACGACAGCATGATGGTTTTCGGT
GAGGTGGGCCTCTCCGGTGAAGTGCGCGCGGTCAGTATGGTAGAAAAAAGGGTACAGGAGGCGGCTAAGCTGGGCTTTAC
CTCCTGTGTCCTTCCCAGAGTGTGTCTGGGGCGGATCCAGGAGCCGCCCGCGGGCCTTAAGCTAATCGGAGTCGGCAATG
TCCAGGAGGCCATTGACCTGATCGCCCGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(351-433)

AAA domain (AAA_25)

(69-227)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9G2P8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

56.55

98.92

0.559
  radA Streptococcus mitis NCTC 12261

52.838

98.92

0.523
  radA Streptococcus mitis SK321

52.838

98.92

0.523
  radA Streptococcus pneumoniae Rx1

52.62

98.92

0.521
  radA Streptococcus pneumoniae D39

52.62

98.92

0.521
  radA Streptococcus pneumoniae R6

52.62

98.92

0.521
  radA Streptococcus pneumoniae TIGR4

52.62

98.92

0.521