Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   J1137_RS08310 Genome accession   NZ_CP071436
Coordinates   1755318..1756745 (-) Length   475 a.a.
NCBI ID   WP_000980605.1    Uniprot ID   -
Organism   Escherichia coli strain EcPNK006     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1750318..1761745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1137_RS08280 (J1137_08280) yeeZ 1750373..1751197 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  J1137_RS08285 (J1137_08285) yeeY 1751243..1752172 (+) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  J1137_RS08290 (J1137_08290) yoeI 1752387..1752449 (+) 63 WP_010723108.1 membrane protein YoeI -
  J1137_RS08295 (J1137_08295) plaP 1752439..1753797 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  J1137_RS08300 (J1137_08300) tsuA 1753976..1755034 (+) 1059 WP_000492330.1 thiosulfate utilization transporter TsuA/YeeE -
  J1137_RS08305 (J1137_08305) tsuB 1755048..1755275 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  J1137_RS08310 (J1137_08310) sbcB 1755318..1756745 (-) 1428 WP_000980605.1 exodeoxyribonuclease I Machinery gene
  J1137_RS08315 (J1137_08315) dacD 1756954..1758120 (+) 1167 WP_087898061.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  J1137_RS08320 (J1137_08320) sbmC 1758239..1758712 (+) 474 WP_001105407.1 DNA gyrase inhibitor SbmC -
  J1137_RS08325 (J1137_08325) yeeA 1758910..1759968 (+) 1059 WP_001200891.1 FUSC family protein -
  J1137_RS08330 (J1137_08330) tmaR 1760140..1760469 (+) 330 WP_000450409.1 DUF496 family protein -
  J1137_RS08335 (J1137_08335) - 1760570..1760935 (-) 366 WP_001280456.1 EutP/PduV family microcompartment system protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54442.69 Da        Isoelectric Point: 5.3480

>NTDB_id=476840 J1137_RS08310 WP_000980605.1 1755318..1756745(-) (sbcB) [Escherichia coli strain EcPNK006]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
NRLGINRQHCLDNLKILRENPQVREEVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=476840 J1137_RS08310 WP_000980605.1 1755318..1756745(-) (sbcB) [Escherichia coli strain EcPNK006]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGATGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTAGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTCTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAACTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
AACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAGAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTTGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579