Detailed information NTG0476838

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: H9Q76_RS03465
• Genome accession: NZ_CP060632
• Coordinates: 717633..718991 (+)
• Length: 452 a.a.
• NCBI ID: WP_249321621.1
• Uniprot ID: -
• Organism: Wujia chipingensis strain NSJ-4
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 712633..723991

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H9Q76_RS03445 (H9Q76_03435)	purD	712884..714155 (+)	1272	WP_118671115.1	phosphoribosylamine--glycine ligase	-
H9Q76_RS03450 (H9Q76_03440)	-	714174..714575 (+)	402	WP_021985639.1	GntR family transcriptional regulator	-
H9Q76_RS03455 (H9Q76_03445)	-	714572..717007 (+)	2436	WP_249321619.1	ATP-dependent Clp protease ATP-binding subunit	-
H9Q76_RS03460 (H9Q76_03450)	-	717135..717548 (+)	414	WP_021985637.1	hypothetical protein	-
H9Q76_RS03465 (H9Q76_03455)	radA	717633..718991 (+)	1359	WP_249321621.1	DNA repair protein RadA	Machinery gene

Sequence

Protein

• Length: 452 a.a.
• Molecular weight: 49194.01 Da
• Isoelectric Point: 7.1714

>NTDB_id=476838 H9Q76_RS03465 WP_249321621.1 717633..718991(+) (radA) [Wujia chipingensis strain NSJ-4]
MAAKEKQIFFCKECGYESAKWQGQCPGCRAWNTFVEENVKVGVKGAVKQPKDAVSPMGILQVTTAEESRVQTGMRELDRV
LGGGIVKGSLVLVGGDPGIGKSTILLQMCRNLVHQNVNVLYVSGEESLSQIKMRAERIGVFEKDMLLLCDNDMDNIERVI
TKSNASVVIIDSIQTMVVEEVGSAPGTVTQVREVTARLMQVAKQYGIAIFIVGHVTKEGNVAGPRTLEHMVDSVLYFEGD
RNHGFRILRGVKNRFGSTNEIGVFTMTEKGLEEVDNPSQALLNGRPQNVSGSVVVSSLEGTRPILVELQALVCQTNFNMP
RRTSVGIDYNRVNLILAVMEKRVGMNLWGYDAYVNIAGGMKVNDTAVDLGVAFAIASSMNNKVVPSDTMIIGEIGLAGEI
RGVTNVLQRVKEADKMGFATCIIPKSNYDKAMDKLNVKILCVSTLVEALSLL

Nucleotide

• Length: 1359 bp

>NTDB_id=476838 H9Q76_RS03465 WP_249321621.1 717633..718991(+) (radA) [Wujia chipingensis strain NSJ-4]
ATGGCAGCAAAGGAAAAACAGATATTTTTTTGTAAAGAATGTGGATATGAGTCTGCAAAATGGCAGGGACAGTGTCCGGG
ATGCCGTGCGTGGAATACATTTGTAGAAGAAAATGTGAAAGTTGGTGTCAAAGGAGCGGTGAAGCAACCGAAGGATGCAG
TCAGTCCTATGGGTATTTTGCAGGTGACAACGGCGGAGGAAAGCCGCGTGCAGACCGGTATGCGGGAACTTGACCGTGTG
CTCGGTGGAGGTATCGTCAAAGGCTCTCTGGTGCTTGTCGGCGGTGATCCCGGAATCGGAAAATCAACCATCCTCTTACA
GATGTGCCGCAATCTGGTGCATCAGAATGTAAATGTACTCTATGTCTCTGGGGAGGAATCGCTGTCGCAGATCAAGATGC
GTGCAGAACGGATTGGCGTATTTGAGAAGGATATGCTTCTTCTGTGTGACAATGACATGGATAATATTGAGCGGGTAATT
ACGAAAAGCAATGCAAGCGTGGTGATCATTGATTCTATACAGACCATGGTTGTAGAAGAGGTTGGATCGGCACCGGGTAC
AGTGACACAGGTGCGTGAAGTGACGGCAAGACTGATGCAGGTAGCTAAGCAGTATGGAATTGCGATCTTTATTGTCGGAC
ATGTCACAAAAGAAGGAAATGTGGCAGGTCCACGTACATTGGAACACATGGTAGATTCCGTCTTGTATTTTGAAGGTGAC
CGGAATCATGGGTTCCGTATTTTGCGTGGTGTGAAAAACCGATTTGGCTCTACGAATGAGATTGGCGTATTTACCATGAC
AGAAAAAGGATTGGAGGAAGTTGATAATCCTTCACAGGCCCTCCTAAATGGACGCCCGCAAAATGTATCCGGCTCTGTTG
TTGTATCTTCCTTAGAAGGAACACGTCCAATTCTGGTAGAATTGCAGGCACTTGTCTGCCAGACGAATTTTAATATGCCG
CGGCGTACATCGGTAGGAATTGATTATAACCGCGTGAATCTGATCTTGGCGGTCATGGAAAAACGTGTCGGCATGAACCT
GTGGGGGTACGATGCATATGTCAATATTGCTGGTGGTATGAAAGTAAATGATACTGCTGTTGATTTAGGCGTTGCGTTTG
CGATAGCATCCAGCATGAATAATAAAGTTGTGCCAAGTGATACGATGATCATCGGGGAGATTGGACTTGCCGGGGAGATC
CGAGGTGTCACAAATGTCCTGCAGCGAGTGAAGGAAGCCGACAAGATGGGATTCGCAACCTGTATTATTCCGAAGTCCAA
TTATGATAAAGCGATGGATAAGCTCAATGTAAAAATCCTATGTGTATCGACGCTGGTAGAGGCTCTTTCTCTGCTTTGA

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (352-427)

• AAA domain (AAA_25) (65-219)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (10-36)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	53.215	99.779	0.531
radA	Streptococcus mitis SK321	51.562	99.115	0.511
radA	Streptococcus mitis NCTC 12261	51.562	99.115	0.511
radA	Streptococcus pneumoniae Rx1	51.562	99.115	0.511
radA	Streptococcus pneumoniae D39	51.562	99.115	0.511
radA	Streptococcus pneumoniae R6	51.562	99.115	0.511
radA	Streptococcus pneumoniae TIGR4	51.562	99.115	0.511