Detailed information NTG0476827

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: J1137_RS04900
• Genome accession: NZ_CP071436
• Coordinates: 1011596..1012588 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain EcPNK006
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1006596..1017588

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J1137_RS04870 (J1137_04870)	ispD	1006657..1007367 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
J1137_RS04875 (J1137_04875)	ispF	1007367..1007846 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
J1137_RS04880 (J1137_04880)	truD	1007843..1008892 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
J1137_RS04885 (J1137_04885)	surE	1008873..1009634 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
J1137_RS04890 (J1137_04890)	pcm	1009628..1010254 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
J1137_RS04895 (J1137_04895)	nlpD	1010439..1011533 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
J1137_RS04900 (J1137_04900)	rpoS	1011596..1012588 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
J1137_RS04905 (J1137_04905)	ygbN	1012682..1014046 (-)	1365	WP_000104459.1	GntP family transporter	-
J1137_RS04910 (J1137_04910)	ygbM	1014135..1014911 (-)	777	WP_001136916.1	HPr family phosphocarrier protein	-
J1137_RS04915 (J1137_04915)	ygbL	1014916..1015554 (-)	639	WP_001278994.1	aldolase	-
J1137_RS04920 (J1137_04920)	otnK	1015551..1016813 (-)	1263	WP_134778521.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=476827 J1137_RS04900 WP_000081550.1 1011596..1012588(+) (rpoS) [Escherichia coli strain EcPNK006]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=476827 J1137_RS04900 WP_000081550.1 1011596..1012588(+) (rpoS) [Escherichia coli strain EcPNK006]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715