Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   H9H53_RS07045 Genome accession   NZ_CP060595
Coordinates   1528132..1528767 (+) Length   211 a.a.
NCBI ID   WP_016391244.1    Uniprot ID   -
Organism   Pseudomonas monteilii strain A2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1523132..1533767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9H53_RS07025 - 1523427..1524359 (+) 933 WP_016715124.1 ABC transporter ATP-binding protein -
  H9H53_RS07030 - 1524356..1525135 (+) 780 WP_016715125.1 ABC transporter permease -
  H9H53_RS07035 - 1525145..1525651 (-) 507 Protein_1370 DUF2062 domain-containing protein -
  H9H53_RS07040 comA 1525794..1528007 (+) 2214 WP_028699304.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  H9H53_RS07045 exbB 1528132..1528767 (+) 636 WP_016391244.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  H9H53_RS07050 - 1528764..1529198 (+) 435 WP_012271149.1 ExbD/TolR family protein -
  H9H53_RS07055 lpxK 1529198..1530199 (+) 1002 WP_060709200.1 tetraacyldisaccharide 4'-kinase -
  H9H53_RS07060 - 1530244..1530429 (+) 186 WP_003247142.1 Trm112 family protein -
  H9H53_RS07065 kdsB 1530426..1531190 (+) 765 WP_016715129.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  H9H53_RS07070 - 1531190..1531654 (+) 465 WP_016715130.1 low molecular weight protein-tyrosine-phosphatase -
  H9H53_RS07075 murB 1531651..1532670 (+) 1020 WP_016715131.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22845.14 Da        Isoelectric Point: 7.3616

>NTDB_id=476820 H9H53_RS07045 WP_016391244.1 1528132..1528767(+) (exbB) [Pseudomonas monteilii strain A2]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=476820 H9H53_RS07045 WP_016391244.1 1528132..1528767(+) (exbB) [Pseudomonas monteilii strain A2]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCTGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCGCCGCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCCCTGCGCGCCGATTCGCCGCTGGGCGAAATCCTTGCCGCAGGCCTGGCCAAC
TCGCGCCATGGCCGCGAAATCATGAAAGAGTGCATCGAGGAAGCCGCCTCGCGCGTCATCCACGAGCTGGAGCGCTACAT
CAGCACCCTCGGCACCATTGCCGCCATGGCCCCGCTGCTGGGCCTGCTGGGCACTGTGCTGGGCATGATCGACATCTTCA
GTGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCCGTACTGGCCGGGGGGATCTCCAAGGCCCTGGTGACCACCGCA
GCAGGCCTGATGGTCGGTATCCCGGCCGTATTCTTCCACCGTTTCCTGCTGCGCCGCATTGATGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAGCTGGTGGAAGTGATCCAGGGCGATCGCGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.938

100

0.829