Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   J1137_RS01885 Genome accession   NZ_CP071436
Coordinates   414031..414708 (-) Length   225 a.a.
NCBI ID   WP_000178155.1    Uniprot ID   -
Organism   Escherichia coli strain EcPNK006     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 409031..419708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1137_RS01870 (J1137_01870) chiA 410398..413091 (+) 2694 WP_024250449.1 bifunctional chitinase/lysozyme -
  J1137_RS01875 (J1137_01875) bfd 413260..413454 (+) 195 WP_000289085.1 bacterioferritin-associated ferredoxin -
  J1137_RS01880 (J1137_01880) bfr 413526..414002 (+) 477 WP_000675504.1 bacterioferritin -
  J1137_RS01885 (J1137_01885) pilD 414031..414708 (-) 678 WP_000178155.1 prepilin peptidase GspO Machinery gene
  J1137_RS01890 (J1137_01890) gspM 414708..415169 (-) 462 WP_001295161.1 type II secretion system protein GspM -
  J1137_RS01895 (J1137_01895) gspL 415166..416329 (-) 1164 WP_001115235.1 type II secretion system protein GspL -
  J1137_RS01900 (J1137_01900) gspK 416344..417327 (-) 984 WP_001058522.1 type II secretion system minor pseudopilin GspK -
  J1137_RS01905 (J1137_01905) gspJ 417320..417907 (-) 588 WP_000610636.1 type II secretion system minor pseudopilin GspJ -
  J1137_RS01910 (J1137_01910) gspI 417900..418277 (-) 378 WP_001041743.1 type II secretion system minor pseudopilin GspI -
  J1137_RS01915 (J1137_01915) gspH 418274..418783 (-) 510 WP_134778497.1 type II secretion system minor pseudopilin GspH -
  J1137_RS01920 (J1137_01920) gspG 418791..419228 (-) 438 WP_001202874.1 type II secretion system major pseudopilin GspG -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24879.74 Da        Isoelectric Point: 7.6578

>NTDB_id=476817 J1137_RS01885 WP_000178155.1 414031..414708(-) (pilD) [Escherichia coli strain EcPNK006]
MTMLLPLFILVGFIAGYFVNAIAYHLSPLEDKTALTFHQVLVHFRQKKYAWHDTVPLILCVAAAIACALAPFTPIVTGAL
FLYFCFVLTLSVIDFRTQLLPDKLTLPLLWLGLVFNAQYGLIDLHDAVYGAVAGYGVLWCVYWGVWLVCHKEGLGYGDFK
LLAAAGAWCGWQTLPMILLIASLGGIGYAIVSQLLQRRTITTIAFGPWLALGSMINLGYLAWISY

Nucleotide


Download         Length: 678 bp        

>NTDB_id=476817 J1137_RS01885 WP_000178155.1 414031..414708(-) (pilD) [Escherichia coli strain EcPNK006]
ATGACAATGCTACTGCCGCTCTTCATTCTGGTTGGTTTTATTGCAGGTTATTTTGTTAATGCCATCGCCTATCACCTCTC
GCCGTTGGAGGATAAAACGGCGTTAACGTTTCACCAGGTATTGGTTCATTTCAGGCAAAAAAAATATGCCTGGCATGATA
CAGTGCCCCTGATACTTTGTGTTGCTGCTGCTATCGCCTGCGCCCTGGCACCTTTCACGCCCATCGTGACTGGCGCACTC
TTTCTCTATTTCTGTTTCGTACTCACGCTCAGTGTTATTGATTTTCGCACTCAGCTCCTGCCCGACAAACTCACCTTACC
GCTGCTCTGGCTTGGCTTGGTATTTAATGCGCAGTATGGATTAATTGATTTACATGATGCGGTTTACGGCGCGGTAGCGG
GCTATGGGGTGCTGTGGTGTGTTTACTGGGGCGTCTGGTTAGTTTGTCACAAAGAGGGATTGGGCTACGGTGATTTCAAG
CTACTGGCCGCTGCAGGCGCATGGTGTGGCTGGCAAACGTTGCCAATGATACTGCTGATTGCCTCGCTGGGTGGCATTGG
TTACGCCATCGTTTCACAACTTCTGCAACGCCGGACTATAACCACTATCGCATTCGGCCCGTGGCTTGCGCTCGGCAGCA
TGATAAACCTGGGGTATCTGGCCTGGATCTCTTATTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(82-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

32.946

100

0.378