Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   H9L11_RS14375 Genome accession   NZ_CP060589
Coordinates   3089181..3090707 (-) Length   508 a.a.
NCBI ID   WP_031777249.1    Uniprot ID   A0AA36UU54
Organism   Vibrio sp. sp1     
Function   promote HapR production (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3088136..3109437 3089181..3090707 within 0


Gene organization within MGE regions


Location: 3088136..3109437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9L11_RS14370 (H9L11_14385) - 3088136..3089206 (-) 1071 WP_205390872.1 glycosyltransferase family 4 protein -
  H9L11_RS14375 (H9L11_14390) luxO 3089181..3090707 (-) 1527 WP_031777249.1 sigma-54 dependent transcriptional regulator Regulator
  H9L11_RS14380 (H9L11_14395) - 3091016..3091396 (-) 381 WP_005377636.1 Hpt domain-containing protein -
  H9L11_RS14385 (H9L11_14400) - 3091408..3092094 (-) 687 WP_005377635.1 AAA family ATPase -
  H9L11_RS14390 (H9L11_14405) - 3092094..3094196 (-) 2103 WP_205390873.1 SLBB domain-containing protein -
  H9L11_RS14395 (H9L11_14410) - 3094193..3095059 (-) 867 WP_017634930.1 OmpA family protein -
  H9L11_RS14400 (H9L11_14415) - 3095086..3095406 (-) 321 WP_017634929.1 STAS domain-containing protein -
  H9L11_RS14405 (H9L11_14420) - 3095830..3096675 (+) 846 WP_017634928.1 DNA ligase -
  H9L11_RS14410 (H9L11_14425) - 3096691..3097689 (-) 999 WP_081107491.1 DUF3080 domain-containing protein -
  H9L11_RS14415 (H9L11_14430) - 3097823..3099193 (-) 1371 WP_005377626.1 MATE family efflux transporter -
  H9L11_RS14420 (H9L11_14435) - 3099586..3100197 (+) 612 WP_005377625.1 riboflavin synthase -
  H9L11_RS14425 (H9L11_14440) - 3100273..3100467 (-) 195 WP_205390874.1 CPXCG motif-containing cysteine-rich protein -
  H9L11_RS14430 (H9L11_14445) - 3100721..3101587 (-) 867 WP_005377623.1 fructosamine kinase family protein -
  H9L11_RS14435 (H9L11_14450) - 3101812..3102786 (+) 975 WP_033905358.1 response regulator -
  H9L11_RS14440 (H9L11_14455) - 3102786..3103748 (+) 963 WP_005389546.1 GGDEF domain-containing protein -
  H9L11_RS14445 (H9L11_14460) - 3103939..3104283 (+) 345 WP_005377620.1 DUF3802 family protein -
  H9L11_RS14450 (H9L11_14465) - 3104329..3104823 (-) 495 WP_025998640.1 NlpC/P60 family protein -
  H9L11_RS14455 (H9L11_14470) - 3104958..3106976 (+) 2019 WP_005389543.1 methyl-accepting chemotaxis protein -
  H9L11_RS14460 (H9L11_14475) - 3107247..3107660 (+) 414 WP_025766662.1 NUDIX domain-containing protein -
  H9L11_RS14465 (H9L11_14480) - 3107871..3108251 (+) 381 WP_169628672.1 hypothetical protein -
  H9L11_RS14470 (H9L11_14485) - 3108300..3108518 (+) 219 WP_005389537.1 hypothetical protein -
  H9L11_RS14475 (H9L11_14490) - 3108622..3109437 (-) 816 WP_064376599.1 sterol desaturase family protein -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 56600.55 Da        Isoelectric Point: 5.9083

>NTDB_id=476786 H9L11_RS14375 WP_031777249.1 3089181..3090707(-) (luxO) [Vibrio sp. sp1]
MRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGREAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIA
TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKLEDLVENIQSKFDRHNYHGFIGSSLPMQAVYKTIDAVA
PTSASVFIVGESGTGKEVCAEAVHRQSDRKDKPFIAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAATLAHGGTLFL
DELCEMELEMQKKLLRFLQTGTYTPLGGTREMKVDVRIICATNRDPLTEVEEGRFREDLYYRVHVIPIDMPPLRERGSDI
VTLAKHFLTTYAKQDKKKFSTIDSEAQHIIKHYEWPGNVRQLQNIIRNIVVLNNDEKVTVSHLPAQLTKKSKVTKTTTPA
HVAQESANIAPITPPPVYTEELSPSAVEPSITAAELPGTPSSAATSPYFNSDGTIRPMWQVEREAIQNAIAYCDGNVLNA
AVMLELSPSTVYRKKQAWEADEINLEQS

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=476786 H9L11_RS14375 WP_031777249.1 3089181..3090707(-) (luxO) [Vibrio sp. sp1]
ATGAGACCAAGGGTGTTACTGGTAGAGGACTCTACTTCACTAGCCATACTTTATAAGCAGTATGTGAAAGACGAACCTTA
TGACATTTTTCATGTCGAGACAGGTCGCGAAGCGATTCAATTTATTGAAAGAAGCAAACCTCAGCTCATCATTCTCGATT
TGAAACTGCCCGACATGTCTGGCGAAGACGTGTTGGATTGGATCAACCAGAATGACATTCCTACGTCCGTTATTATTGCT
ACGGCACACGGCAGCGTCGACTTAGCCGTTAATCTAATTCAAAAAGGTGCGGAAGATTTCTTAGAAAAGCCCATAAACGC
TGATCGCCTAAAAACATCAGTCGCATTGCACCTCAAACGCGCCAAATTGGAAGATTTGGTGGAAAATATTCAGTCCAAGT
TTGATCGCCACAACTATCACGGATTCATCGGTTCAAGCCTCCCGATGCAGGCGGTATACAAGACCATTGATGCTGTTGCG
CCAACTTCTGCCAGTGTGTTTATTGTGGGAGAAAGCGGCACAGGTAAAGAAGTTTGTGCTGAAGCCGTCCACCGCCAGAG
CGACCGTAAAGACAAGCCTTTTATTGCAATTAACTGTGGGGCTATTCCACGAGATTTGATGGAAAGTGAGATTTTTGGTC
ACGTTAAAGGGGCCTTTACTGGAGCAACAACAGATCGAAAAGGTGCGGCGACGCTGGCACATGGTGGCACGCTTTTTCTT
GATGAGCTGTGTGAAATGGAACTTGAGATGCAAAAGAAGTTGCTCCGCTTTCTACAAACGGGCACTTACACCCCTCTTGG
TGGCACTCGAGAAATGAAAGTGGATGTGAGAATCATTTGTGCCACCAACCGAGATCCATTAACAGAAGTAGAAGAAGGTC
GTTTTCGTGAAGACTTATACTACCGTGTGCACGTTATACCTATCGATATGCCCCCATTACGTGAACGAGGAAGTGACATC
GTCACGCTTGCCAAGCACTTCTTGACCACTTACGCCAAACAGGACAAAAAGAAATTCTCAACAATCGACAGCGAAGCTCA
ACATATCATCAAGCATTACGAATGGCCGGGTAATGTAAGGCAACTACAAAACATCATACGTAACATTGTGGTGCTTAATA
ACGACGAAAAAGTCACGGTGAGCCACCTACCCGCTCAACTTACTAAAAAGTCTAAAGTGACGAAAACAACGACGCCTGCG
CATGTTGCTCAAGAGTCAGCAAACATTGCACCAATCACACCACCACCTGTTTATACTGAGGAACTTTCACCTTCTGCGGT
CGAACCGTCGATTACCGCAGCGGAGCTGCCTGGTACACCGTCCTCTGCTGCTACCTCACCGTACTTTAACTCTGATGGAA
CCATTCGTCCTATGTGGCAAGTAGAGCGTGAAGCAATTCAAAACGCAATCGCGTACTGTGATGGCAACGTCCTCAACGCC
GCTGTCATGCTGGAGTTAAGCCCATCTACGGTTTACCGAAAAAAACAAGCGTGGGAAGCGGATGAAATTAATCTCGAACA
ATCTTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(143-308)

Bacterial regulatory protein, Fis family (HTH_8)

(458-494)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.899

97.047

0.484