Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   H9L11_RS13340 Genome accession   NZ_CP060589
Coordinates   2853340..2854761 (-) Length   473 a.a.
NCBI ID   WP_005377886.1    Uniprot ID   -
Organism   Vibrio sp. sp1     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2848340..2859761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9L11_RS13315 (H9L11_13330) - 2848871..2849521 (+) 651 WP_205390825.1 thiopurine S-methyltransferase -
  H9L11_RS13320 (H9L11_13335) purT 2849594..2850769 (-) 1176 WP_005377894.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  H9L11_RS13325 (H9L11_13340) cdd 2850913..2851800 (-) 888 WP_005377892.1 cytidine deaminase -
  H9L11_RS13330 (H9L11_13345) - 2852231..2852908 (-) 678 WP_005377888.1 LrgB family protein -
  H9L11_RS13335 (H9L11_13350) - 2852910..2853284 (-) 375 WP_005377887.1 CidA/LrgA family protein -
  H9L11_RS13340 (H9L11_13355) sbcB 2853340..2854761 (-) 1422 WP_005377886.1 exodeoxyribonuclease I Machinery gene
  H9L11_RS13345 (H9L11_13360) - 2854919..2856292 (-) 1374 WP_005377885.1 L-cystine transporter -
  H9L11_RS13350 (H9L11_13365) - 2856493..2857182 (-) 690 WP_017820877.1 NAD(P)H-binding protein -
  H9L11_RS13355 (H9L11_13370) cobT 2857431..2858474 (+) 1044 WP_205390826.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  H9L11_RS13360 (H9L11_13375) - 2858504..2859280 (+) 777 WP_031777196.1 adenosylcobinamide-GDP ribazoletransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54388.54 Da        Isoelectric Point: 4.8633

>NTDB_id=476785 H9L11_RS13340 WP_005377886.1 2853340..2854761(-) (sbcB) [Vibrio sp. sp1]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGARTDENFNIIGEPLVMYCQPPADYLPSPEAALITGITPQKTVQEGLSEP
EFIAKIHAELARPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVANGIEHSNAHDAMADVVATIEMAKKVKAAQPKLFDYFFSMRQKRKLNDLVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELHERLYTKREDLGELLPVPVKLVHLNKCPILAPAKTLTAENAES
IGIDRQQCLANLALLRQHPEIREKLISLFSVERKFDKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=476785 H9L11_RS13340 WP_005377886.1 2853340..2854761(-) (sbcB) [Vibrio sp. sp1]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGATTATGAGACATGGGGAACCAACCCCGCGAAAGATCGCCCAAG
CCAGTTTGCTGGTGCTCGTACAGATGAAAACTTTAATATCATCGGCGAGCCTTTAGTCATGTACTGTCAACCACCGGCTG
ATTATCTTCCGTCTCCTGAAGCTGCGCTTATTACTGGTATTACTCCGCAAAAAACGGTTCAAGAAGGCCTTTCTGAGCCA
GAGTTTATCGCTAAGATTCACGCTGAACTCGCGAGACCAAATACCACCAGTTTAGGCTACAACAGCATTCGCTTTGATGA
CGAAGTGACCCGTTATACTTGTTATCGCAACTTCATCGATCCATACGCATGGAGTTGGCAAAACGGTAACTCGCGTTGGG
ATTTACTCGATGTACTACGCGCGTGCCATGCCCTTCGCCCAGAAGGCGTAGAATGGCCAGAAAACGAAGATGGCTTCACT
AGCTTTAAATTAGAACATTTGTCCGTGGCTAACGGCATAGAACATAGTAACGCGCACGATGCGATGGCAGATGTGGTTGC
GACTATCGAAATGGCAAAGAAAGTAAAAGCAGCGCAACCAAAATTGTTTGATTACTTTTTTTCTATGCGCCAAAAGCGCA
AGCTCAATGATTTAGTCGACATCGTCAACATGACACCGTTGATGCACGTTTCAGGCATGCTAGGGCGCGAATGTCAGTAC
ACTAGCTGGATTGTGCCTGTTGCTTGGCATCCAACCAATAATAACGCCGTTATCACCATCGATTTAGCGAAAGACCCTCA
ACCTATTCTTGAGCTATCCGCAGAAGAGCTGCACGAAAGACTCTACACGAAGCGCGAAGATCTTGGTGAATTGCTACCAG
TGCCAGTTAAACTAGTTCATTTGAACAAATGCCCTATTCTCGCCCCTGCAAAAACGTTAACGGCTGAAAATGCGGAGTCT
ATTGGCATTGATCGCCAGCAATGTCTCGCCAATCTCGCTTTGTTGCGCCAACATCCTGAAATTAGAGAAAAGCTGATTAG
CCTCTTTTCAGTCGAGCGCAAATTCGATAAAAGTGATGACGTCGATACACAACTTTACGACGGGTTCTTTTCTCCAGCCG
ATCGCGCAGCTATGGATATCATTCGCGAAACCGATCCGAATAATCTTGCTGCATTAGACATTGAATTTGATGACAAGCGT
ATTAAACCTCTATTGTTCCGCTATCGTGCGCGTAACTTCCCAGGCACACTAGACGAGCAAGAACAAAGACGCTGGGCACT
ACACTGTCGAGAAGTGTTTGAAAGCCAAATTGAAGAGTACATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCGATATTAAAATCCGTGTACCGTTATGTAGAGAGCTTAGCTTCCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.281

100

0.793