Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   J0O73_RS15260 Genome accession   NZ_CP071375
Coordinates   3117907..3119334 (+) Length   475 a.a.
NCBI ID   WP_089553450.1    Uniprot ID   -
Organism   Escherichia coli strain E105     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3112907..3124334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0O73_RS15230 (J0O73_24130) - 3113448..3113807 (-) 360 WP_053884212.1 hypothetical protein -
  J0O73_RS15235 (J0O73_15220) - 3113786..3114082 (+) 297 Protein_3018 EutP/PduV family microcompartment system protein -
  J0O73_RS15240 (J0O73_15225) tmaR 3114183..3114512 (-) 330 WP_000450409.1 DUF496 family protein -
  J0O73_RS15245 (J0O73_15230) yeeA 3114684..3115742 (-) 1059 WP_001200891.1 FUSC family protein -
  J0O73_RS15250 (J0O73_15235) sbmC 3115940..3116413 (-) 474 WP_001105389.1 DNA gyrase inhibitor SbmC -
  J0O73_RS15255 (J0O73_15240) dacD 3116532..3117698 (-) 1167 WP_001442313.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  J0O73_RS15260 (J0O73_15245) sbcB 3117907..3119334 (+) 1428 WP_089553450.1 exodeoxyribonuclease I Machinery gene
  J0O73_RS15265 (J0O73_15250) tsuB 3119377..3119604 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  J0O73_RS15270 (J0O73_15255) tsuA 3119618..3120676 (-) 1059 WP_000492305.1 thiosulfate utilization transporter TsuA/YeeE -
  J0O73_RS15275 (J0O73_15260) plaP 3120855..3122213 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  J0O73_RS15280 (J0O73_15265) yoeI 3122203..3122265 (-) 63 WP_010723108.1 membrane protein YoeI -
  J0O73_RS15285 (J0O73_15270) yeeY 3122480..3123409 (-) 930 WP_207184224.1 LysR substrate-binding domain-containing protein -
  J0O73_RS15290 (J0O73_15275) yeeZ 3123455..3124279 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54485.80 Da        Isoelectric Point: 5.6102

>NTDB_id=476775 J0O73_RS15260 WP_089553450.1 3117907..3119334(+) (sbcB) [Escherichia coli strain E105]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENNDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=476775 J0O73_RS15260 WP_089553450.1 3117907..3119334(+) (sbcB) [Escherichia coli strain E105]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CAGATGACTATTTACCCCAGCCCGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATAATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGAATATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCAGGGACGCTGGATTATGCCGAGCAGCAACGTTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.298

98.947

0.577