Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   H9L11_RS03740 Genome accession   NZ_CP060589
Coordinates   812977..813495 (-) Length   172 a.a.
NCBI ID   WP_017820391.1    Uniprot ID   A0A2I3C9Z1
Organism   Vibrio sp. sp1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 807977..818495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9L11_RS03715 (H9L11_03715) rimM 808066..808614 (-) 549 WP_005379964.1 ribosome maturation factor RimM -
  H9L11_RS03720 (H9L11_03720) rpsP 808644..808892 (-) 249 WP_005379962.1 30S ribosomal protein S16 -
  H9L11_RS03725 (H9L11_03725) ffh 809102..810484 (-) 1383 WP_005385423.1 signal recognition particle protein -
  H9L11_RS03730 (H9L11_03730) - 810709..811503 (+) 795 WP_005379950.1 inner membrane protein YpjD -
  H9L11_RS03735 (H9L11_03735) - 811628..812908 (+) 1281 WP_005379948.1 CNNM domain-containing protein -
  H9L11_RS03740 (H9L11_03740) luxS 812977..813495 (-) 519 WP_017820391.1 S-ribosylhomocysteine lyase Regulator
  H9L11_RS03745 (H9L11_03745) - 813580..814185 (-) 606 WP_172563496.1 hypothetical protein -
  H9L11_RS03750 (H9L11_03750) gshA 814209..815777 (-) 1569 WP_033905598.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19074.83 Da        Isoelectric Point: 4.8443

>NTDB_id=476753 H9L11_RS03740 WP_017820391.1 812977..813495(-) (luxS) [Vibrio sp. sp1]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVESQNKIPELNEYQCGTAAMHSLKEAQQIAKNILDAGVSVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=476753 H9L11_RS03740 WP_017820391.1 812977..813495(-) (luxS) [Vibrio sp. sp1]
ATGCCTTTACTCGATAGTTTTACCGTGGACCACACTCGTATGAATGCACCGGCAGTGCGAGTGGCGAAAACCATGCAGAC
CCCAAAAGGGGATACGATTACTGTTTTCGACTTACGCTTTACTGCGCCAAACAAAGACATTCTTTCTGAAAAAGGTATTC
ACACCCTAGAGCACCTTTATGCAGGCTTTATGCGTAATCACCTAAACGGTGATTCTGTTGAGATCATCGATATTTCGCCT
ATGGGTTGCCGCACAGGTTTTTACATGAGTCTGATTGGCACACCATCAGAGCAGCAAGTCGCAGATGCTTGGATTGCAGC
AATGGAAGACGTGCTGAAGGTAGAAAGTCAGAATAAGATCCCTGAACTTAACGAATACCAATGCGGCACGGCAGCAATGC
ACTCTTTAAAAGAAGCACAACAGATCGCAAAGAACATTTTGGATGCTGGTGTTTCGGTGAACAAAAATGATGAACTTGCT
TTGCCTGAGTCGATGTTAAAAGAGTTGCGTATCGACTAG

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I3C9Z1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.135

99.419

0.866