Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   H9L11_RS03635 Genome accession   NZ_CP060589
Coordinates   790453..791067 (+) Length   204 a.a.
NCBI ID   WP_005379994.1    Uniprot ID   -
Organism   Vibrio sp. sp1     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 791213..808892 790453..791067 flank 146


Gene organization within MGE regions


Location: 790453..808892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9L11_RS03635 (H9L11_03635) opaR 790453..791067 (+) 615 WP_005379994.1 transcriptional regulator OpaR Regulator
  H9L11_RS03640 (H9L11_03640) lpdA 791213..792640 (-) 1428 WP_005379993.1 dihydrolipoyl dehydrogenase -
  H9L11_RS03645 (H9L11_03645) aceF 792908..794800 (-) 1893 WP_033905589.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  H9L11_RS03650 (H9L11_03650) aceE 794820..797483 (-) 2664 WP_005386612.1 pyruvate dehydrogenase (acetyl-transferring), homodimeric type -
  H9L11_RS03655 (H9L11_03655) pdhR 797532..798299 (-) 768 WP_005379989.1 pyruvate dehydrogenase complex transcriptional repressor PdhR -
  H9L11_RS03660 (H9L11_03660) ampD 798705..799256 (-) 552 WP_005386614.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  H9L11_RS03665 (H9L11_03665) nadC 799349..800236 (+) 888 WP_033905590.1 carboxylating nicotinate-nucleotide diphosphorylase -
  H9L11_RS03670 (H9L11_03670) pilA 800499..800963 (+) 465 WP_033905592.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  H9L11_RS03675 (H9L11_03675) pilB 800967..802652 (+) 1686 WP_033905593.1 type IV-A pilus assembly ATPase PilB Machinery gene
  H9L11_RS03680 (H9L11_03680) pilC 802676..803899 (+) 1224 WP_205390996.1 type II secretion system F family protein Machinery gene
  H9L11_RS03685 (H9L11_03685) pilD 803964..804833 (+) 870 WP_017635919.1 A24 family peptidase Machinery gene
  H9L11_RS03690 (H9L11_03690) coaE 804834..805448 (+) 615 WP_017635920.1 dephospho-CoA kinase -
  H9L11_RS03695 (H9L11_03695) zapD 805476..806216 (+) 741 WP_005373086.1 cell division protein ZapD -
  H9L11_RS03700 (H9L11_03700) yacG 806375..806569 (+) 195 WP_017635922.1 DNA gyrase inhibitor YacG -
  H9L11_RS03705 (H9L11_03705) rplS 806882..807235 (-) 354 WP_005379971.1 50S ribosomal protein L19 -
  H9L11_RS03710 (H9L11_03710) trmD 807277..808038 (-) 762 WP_033905595.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  H9L11_RS03715 (H9L11_03715) rimM 808066..808614 (-) 549 WP_005379964.1 ribosome maturation factor RimM -
  H9L11_RS03720 (H9L11_03720) rpsP 808644..808892 (-) 249 WP_005379962.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23609.89 Da        Isoelectric Point: 6.4042

>NTDB_id=476748 H9L11_RS03635 WP_005379994.1 790453..791067(+) (opaR) [Vibrio sp. sp1]
MDSIAKRPRTRLSPIKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDLHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRAKGEAELKHLVNSYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=476748 H9L11_RS03635 WP_005379994.1 790453..791067(+) (opaR) [Vibrio sp. sp1]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCAATTAAGCGTAAGCAACAGTTAATGGAAATCGCATTGGA
AGTATTTGCGCGCCGCGGCATCGGTCGTGGTGGTCACGCAGATATCGCAGAAATTGCTCAAGTTTCTGTAGCGACTGTTT
TTAACTACTTCCCTACACGCGAAGACTTGGTGGATGAAGTTCTCAATCACGTCGTACGTCAGTTCTCAAACTTCCTATCG
GATAACATAGACCTAGACTTACATGCACGTGAAAACATCGCCAATATTACTAATGCGATGATCGAGCTTGTCAGCCAAGA
TTGTCACTGGCTAAAAGTATGGTTCGAGTGGAGTGCTTCAACACGTGACGAAGTATGGCCATTGTTTGTTTCAACTAACC
GTACTAACCAGTTGCTGGTACAAAACATGTTCATTAAAGCAATTGAACGTGGCGAAGTGTGTGACCAGCACGATTCAGAA
CACTTGGCAAACCTGTTCCACGGTATTTGTTACTCACTGTTTGTCCAAGCGAACCGCGCTAAAGGTGAAGCGGAGCTGAA
ACACCTAGTGAATTCATACTTAGATATGCTTTGCATTTACAACCGTGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

97.059

100

0.971
  hapR Vibrio cholerae C6706

73.232

97.059

0.711
  hapR Vibrio cholerae strain A1552

73.232

97.059

0.711