Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   JZY07_RS10735 Genome accession   NZ_CP071305
Coordinates   2175608..2176057 (-) Length   149 a.a.
NCBI ID   WP_024399878.1    Uniprot ID   -
Organism   Streptococcus suis strain SC183     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2170608..2181057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZY07_RS10720 (JZY07_10720) - 2171105..2171899 (+) 795 WP_024384180.1 formate/nitrite transporter family protein -
  JZY07_RS10725 (JZY07_10725) - 2171982..2173766 (-) 1785 WP_024411699.1 ABC transporter ATP-binding protein -
  JZY07_RS10730 (JZY07_10730) - 2173906..2175615 (-) 1710 WP_024411698.1 ABC transporter ATP-binding protein -
  JZY07_RS10735 (JZY07_10735) rcrR 2175608..2176057 (-) 450 WP_024399878.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  JZY07_RS10740 (JZY07_10740) - 2176279..2177295 (+) 1017 WP_014638751.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  JZY07_RS10745 (JZY07_10745) galU 2177341..2178240 (+) 900 WP_024399879.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  JZY07_RS10750 (JZY07_10750) - 2178237..2179696 (-) 1460 Protein_2100 IS1182 family transposase -
  JZY07_RS10755 (JZY07_10755) - 2179829..2180506 (-) 678 WP_024399699.1 rhomboid family intramembrane serine protease -
  JZY07_RS10760 (JZY07_10760) - 2180490..2181032 (-) 543 WP_024399698.1 5-formyltetrahydrofolate cyclo-ligase -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 17664.28 Da        Isoelectric Point: 8.8886

>NTDB_id=476726 JZY07_RS10735 WP_024399878.1 2175608..2176057(-) (rcrR) [Streptococcus suis strain SC183]
MGHTIADFRNLLNQIEQISETIAKEYDVEHLAGPQGWALRFIAERSEVETFVKDIEAELKISKSVASNLVKRMEKNDFIR
VLPSQFDRRYKQLVLTEKGRSKICHLKSFHEEMHHSLFRGIQKEEFDLIRQVVDQLKENIRNYKEKKHV

Nucleotide


Download         Length: 450 bp        

>NTDB_id=476726 JZY07_RS10735 WP_024399878.1 2175608..2176057(-) (rcrR) [Streptococcus suis strain SC183]
ATGGGACATACTATTGCAGATTTTCGGAATCTATTAAATCAGATTGAACAAATCAGTGAAACCATTGCAAAGGAATATGA
TGTGGAGCACCTAGCTGGACCACAGGGATGGGCCCTGCGTTTCATAGCAGAACGGTCTGAAGTTGAAACCTTTGTCAAAG
ACATTGAAGCGGAGTTAAAGATTTCCAAATCCGTTGCCAGCAATCTAGTTAAGCGAATGGAGAAAAATGACTTTATTCGG
GTTTTACCTTCTCAGTTTGACAGACGCTACAAGCAGTTGGTCTTGACAGAGAAAGGTCGGAGCAAGATTTGTCACCTAAA
ATCCTTCCATGAGGAGATGCACCATTCTCTCTTTCGAGGTATTCAAAAGGAAGAATTTGATTTGATCAGACAGGTGGTCG
ATCAATTAAAAGAAAATATTAGAAATTATAAGGAGAAAAAACATGTTTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

44.286

93.96

0.416