Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JZY07_RS10685 Genome accession   NZ_CP071305
Coordinates   2166128..2167495 (-) Length   455 a.a.
NCBI ID   WP_024404944.1    Uniprot ID   -
Organism   Streptococcus suis strain SC183     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2161128..2172495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZY07_RS10675 (JZY07_10675) - 2164528..2165286 (-) 759 WP_013730631.1 TIGR00266 family protein -
  JZY07_RS10680 (JZY07_10680) - 2165510..2166004 (-) 495 WP_014638738.1 carbonic anhydrase -
  JZY07_RS10685 (JZY07_10685) radA 2166128..2167495 (-) 1368 WP_024404944.1 DNA repair protein RadA Machinery gene
  JZY07_RS10690 (JZY07_10690) - 2167502..2167945 (-) 444 WP_024388517.1 dUTP diphosphatase -
  JZY07_RS10695 (JZY07_10695) - 2167973..2168488 (-) 516 WP_024411702.1 hypothetical protein -
  JZY07_RS10700 (JZY07_10700) - 2168535..2168699 (+) 165 WP_153309164.1 hypothetical protein -
  JZY07_RS10705 (JZY07_10705) - 2168683..2169042 (-) 360 WP_024384177.1 YbaN family protein -
  JZY07_RS10710 (JZY07_10710) - 2169170..2169772 (+) 603 WP_024411701.1 NADPH-dependent FMN reductase -
  JZY07_RS10715 (JZY07_10715) - 2169788..2171022 (+) 1235 Protein_2093 NAD(P)H-dependent oxidoreductase -
  JZY07_RS10720 (JZY07_10720) - 2171105..2171899 (+) 795 WP_024384180.1 formate/nitrite transporter family protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49871.38 Da        Isoelectric Point: 6.1911

>NTDB_id=476725 JZY07_RS10685 WP_024404944.1 2166128..2167495(-) (radA) [Streptococcus suis strain SC183]
MIIAKKKTTFVCQSCEYHSPKYLGRCPNCGSWSSFVEEVEVAEVKNERVSLTGEKTRPMKLNEVSSIQVARTKTNMEEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSTIGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRTE
IEKIKPDFLIIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTNPQECFIGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYAPKNSLTGIKVPKEITVIGVTTIGEVLQKVFN

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=476725 JZY07_RS10685 WP_024404944.1 2166128..2167495(-) (radA) [Streptococcus suis strain SC183]
ATCATCATCGCTAAGAAAAAAACAACCTTTGTCTGTCAATCCTGCGAGTACCACTCACCCAAGTATCTGGGCCGCTGCCC
CAACTGTGGCTCCTGGTCTAGCTTTGTCGAGGAAGTGGAAGTCGCTGAAGTCAAGAACGAGCGGGTCAGCCTGACAGGTG
AGAAGACCCGTCCCATGAAGCTCAATGAAGTTTCCTCCATTCAAGTGGCTCGTACTAAGACCAACATGGAAGAGTTCAAC
CGCGTCCTCGGAGGCGGCGTGGTACCGGGAAGTCTGGTCCTGATTGGAGGCGATCCAGGAATCGGGAAATCCACCCTGCT
TTTACAGGTATCGACCCAACTTTCGACCATTGGTACCGTCCTCTATGTGTCGGGGGAAGAATCTGCCCAGCAGATTAAGT
TGCGGGCGGAGCGTTTGGGCGACATCGACAGCGAGTTCTATCTCTATGCGGAGACCAATATGCAGAGCATTCGGACCGAG
ATTGAGAAGATAAAACCAGATTTCCTGATTATCGACTCTATCCAGACCATTATGAGCCCTGACATTTCTAGCGTACAAGG
CTCTGTCAGTCAGGTCCGTGAAGTGACCAATGAACTCATGCAGATTGCCAAGACCAACAACATCGCAACATTCATCGTCG
GCCACATGACCAAGGAAGGCACCCTGGCTGGACCGCGGACCTTGGAGCACATGGTGGACACCGTTCTCTATTTTGAGGGC
GAGCGACAGCACACCTTCCGTATCTTGCGGGCGGTCAAAAACCGCTTTGGCTCCACCAACGAAATCGGCATTTTTGAAAT
GCAGTCGCAGGGCTTAGTCGAAGTCCTCAATCCTAGTGAAGTCTTTCTGGAGGAGCGTTTGGACGGGGCGACTGGCTCTG
CGATTGTCGTGACCATGGAGGGCACCCGCCCGATCCTTGCAGAAGTGCAGGCCTTGGTGACGCCGACCATGTTTGGCAAT
GCCAAGCGGACCACGACAGGCTTGGACTTCAACCGTGCCAGCTTGATTATGGCGGTTTTGGAAAAACGGGCAGGCCTGCT
CCTCCAAAACCAAGATGCCTACCTCAAATCAGCAGGCGGTGTCAAACTGGATGAGCCAGCTATTGACCTTGCGGTCGCAG
TTGCCCTTGCCTCCAGTTACAAGGATAAGCCGACCAACCCACAAGAGTGCTTTATAGGCGAAATCGGTCTGACAGGTGAA
ATCCGCCGCGTCAATCGGATTGAACAACGGATTAACGAAGCCGCTAAATTGGGCTTTACCAAGGTCTATGCCCCCAAAAA
TTCCCTGACAGGTATCAAGGTACCCAAGGAAATCACCGTTATCGGCGTGACAACCATTGGCGAAGTCTTGCAGAAAGTGT
TCAACTGA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

AAA domain (AAA_25)

(64-220)

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

91.372

99.341

0.908
  radA Streptococcus pneumoniae Rx1

91.15

99.341

0.905
  radA Streptococcus pneumoniae D39

91.15

99.341

0.905
  radA Streptococcus pneumoniae R6

91.15

99.341

0.905
  radA Streptococcus pneumoniae TIGR4

91.15

99.341

0.905
  radA Streptococcus mitis SK321

90.929

99.341

0.903
  radA/sms Bacillus subtilis subsp. subtilis str. 168

62.693

99.56

0.624