Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   H9N29_RS13845 Genome accession   NZ_CP060585
Coordinates   2893103..2893708 (+) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica strain GX1006     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2888103..2898708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9N29_RS13825 - 2888498..2890258 (-) 1761 WP_023203508.1 AAA family ATPase -
  H9N29_RS13830 matP 2890444..2890896 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  H9N29_RS13835 ompA 2890968..2892020 (-) 1053 WP_001670727.1 porin OmpA -
  H9N29_RS13840 sulA 2892377..2892886 (-) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  H9N29_RS13845 sxy/tfoX 2893103..2893708 (+) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  H9N29_RS13850 yccS 2893695..2895848 (-) 2154 WP_000950881.1 YccS family putative transporter -
  H9N29_RS13855 - 2895867..2896313 (-) 447 WP_001261222.1 YccF domain-containing protein -
  H9N29_RS13860 helD 2896437..2898491 (+) 2055 WP_183050061.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=476723 H9N29_RS13845 WP_001202375.1 2893103..2893708(+) (sxy/tfoX) [Salmonella enterica strain GX1006]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=476723 H9N29_RS13845 WP_001202375.1 2893103..2893708(+) (sxy/tfoX) [Salmonella enterica strain GX1006]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751