Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   JZY07_RS09560 Genome accession   NZ_CP071305
Coordinates   1922654..1925479 (-) Length   941 a.a.
NCBI ID   WP_105120118.1    Uniprot ID   -
Organism   Streptococcus suis strain SC183     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1917654..1930479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZY07_RS09540 (JZY07_09540) - 1917947..1918294 (-) 348 WP_014638582.1 hypothetical protein -
  JZY07_RS09545 (JZY07_09545) - 1918307..1919395 (-) 1089 WP_024389236.1 hypothetical protein -
  JZY07_RS09550 (JZY07_09550) - 1919454..1922312 (-) 2859 WP_105105069.1 G5 domain-containing protein -
  JZY07_RS09555 (JZY07_09555) - 1922451..1922624 (+) 174 WP_002942417.1 YlcI/YnfO family protein -
  JZY07_RS09560 (JZY07_09560) uvrA 1922654..1925479 (-) 2826 WP_105120118.1 excinuclease ABC subunit UvrA Machinery gene
  JZY07_RS09565 (JZY07_09565) - 1926099..1927043 (+) 945 WP_002939248.1 magnesium transporter CorA family protein -
  JZY07_RS09570 (JZY07_09570) - 1927059..1927715 (+) 657 WP_044757578.1 DUF1129 domain-containing protein -
  JZY07_RS09575 (JZY07_09575) rpsR 1928155..1928394 (-) 240 WP_002939250.1 30S ribosomal protein S18 -
  JZY07_RS09580 (JZY07_09580) ssbA 1928427..1928921 (-) 495 WP_002942409.1 single-stranded DNA-binding protein Machinery gene
  JZY07_RS09585 (JZY07_09585) rpsF 1928933..1929223 (-) 291 WP_002942403.1 30S ribosomal protein S6 -
  JZY07_RS09590 (JZY07_09590) - 1929395..1930384 (-) 990 WP_024411934.1 lipoate--protein ligase -

Sequence

Protein


Download         Length: 941 a.a.        Molecular weight: 103938.08 Da        Isoelectric Point: 6.1093

>NTDB_id=476715 JZY07_RS09560 WP_105120118.1 1922654..1925479(-) (uvrA) [Streptococcus suis strain SC183]
MQENIVIHGARAHNLKNIDVTIPREKLVVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLGNMDKPDVDSIEGL
SPAISIDQKTTSRNPRSTVGTATEINDYLRLLYARVGVPYCINGHGAIAASSVEQIVDEVLELPERQRLQILAPIVRKKK
GQHKTIFEKIQKDGYVRVRVNGDVYDVSEVPELSKSKAHNIEVVVDRIVIKEGIRSRLFDSIEAALRIADGYVIIDTMDE
KELLFSEYYACPVCGFTVPELEPRLFSFNAPFGSCSDCDGLGMKLEVDTDLIVPDASKTLRDGALAPWNPISSNYYPQML
EQAMNHFGVDMDKPFEELTEEEKNLIFNGSDGKEFHFHYENEFGGVRDIDIPFEGLITNINRRYRETNSDYTRTVMKTYM
NELTCGTCHGYRLNDQALSVKVGGEQGLHIGQLSDLSVADHLQVIEHLTLSENEATIATPIVKEIKDRLSFLNNVGLNYL
TLSRAAGTLSGGESQRIRLATQIGSNLSGVLYILDEPSIGLHQRDNDRLIASLKKMRDLGNTLIVVEHDEDTMREADWLI
DIGPGAGVFGGEVVASGTPDQVAKNKKSITGQYLSGKRQIPVPLERRVGNGRFLEVIGAKENNLQDVTVRFPLGKFVAVT
GVSGSGKSTLVNSILKKAIAQKLNRNSDKPGKFKSISGIEHLDRLIDIDQSPIGRTPRSNPATYTGVFDDIRDLFAQTNE
AKIRGYKKGRFSFNVKGGRCEACSGDGIIKIEMHFLPDVFVPCEVCHGHRYNSETLEVHYKEKNIAQVLDMTVNDAVEFF
KHIPKIERKLRTIQDVGLGYVTLGQPATTLSGGEAQRMKLASELHKRSTGKSLYILDEPTTGLHTEDIAQLLKVLARFVD
DGNTVLVIEHNLDVIKTADHIIDMGPEGGVGGGTVVATGTPEEVAENPASFTGQYLKTKLK

Nucleotide


Download         Length: 2826 bp        

>NTDB_id=476715 JZY07_RS09560 WP_105120118.1 1922654..1925479(-) (uvrA) [Streptococcus suis strain SC183]
ATGCAAGAAAATATTGTGATTCATGGGGCGCGTGCCCATAATTTGAAAAATATTGATGTGACCATTCCGCGTGAGAAGTT
GGTGGTGGTAACTGGTTTGTCGGGGTCTGGTAAGTCGAGTTTGGCTTTTGATACTCTGTATGCCGAAGGCCAACGCCGCT
ATGTGGAGTCTTTGTCTGCCTATGCTCGTCAGTTCTTGGGCAACATGGACAAGCCAGATGTGGATTCTATAGAGGGTCTC
AGCCCTGCTATTTCCATAGACCAAAAAACAACCTCGCGGAATCCACGTTCGACAGTCGGGACAGCAACGGAAATCAATGA
CTATCTCCGTTTGCTCTATGCTCGGGTCGGGGTACCTTACTGTATCAATGGCCACGGAGCAATTGCGGCTTCTTCGGTGG
AGCAAATTGTTGATGAAGTTTTGGAATTGCCTGAGCGTCAGCGCTTGCAGATTTTGGCGCCGATTGTACGCAAGAAAAAG
GGGCAGCACAAGACCATTTTTGAGAAAATCCAGAAGGACGGCTATGTTCGGGTACGGGTCAACGGCGATGTCTATGATGT
GTCGGAAGTACCAGAGTTGTCCAAGAGTAAGGCTCATAATATTGAAGTCGTTGTCGATCGAATTGTGATAAAAGAAGGCA
TTCGCTCGCGACTTTTCGATTCTATCGAAGCGGCCCTGCGGATTGCGGACGGCTATGTCATCATCGATACCATGGATGAG
AAGGAACTGCTCTTCTCTGAGTACTATGCCTGCCCAGTTTGTGGTTTTACAGTGCCCGAGTTGGAGCCTCGTCTTTTCTC
TTTCAATGCTCCTTTTGGGTCTTGTAGCGACTGTGACGGTTTGGGCATGAAGCTGGAAGTGGATACGGATTTGATTGTCC
CAGATGCCAGCAAGACCTTGCGTGACGGTGCCTTGGCTCCGTGGAATCCTATTTCTTCTAACTACTATCCTCAGATGTTG
GAGCAGGCCATGAACCATTTTGGTGTGGATATGGACAAGCCTTTCGAGGAATTGACGGAAGAGGAGAAGAACCTGATTTT
CAACGGTTCTGACGGGAAAGAATTCCATTTCCATTATGAAAATGAGTTCGGTGGAGTCCGAGACATCGACATTCCATTCG
AGGGCTTGATTACCAACATTAATCGCCGCTACCGTGAAACCAATAGTGATTACACACGGACAGTCATGAAGACTTACATG
AATGAGCTGACCTGTGGGACCTGCCACGGCTATCGCCTCAATGACCAAGCCCTGTCTGTCAAAGTCGGTGGCGAGCAGGG
ACTTCATATCGGACAATTATCAGACTTGTCCGTAGCGGATCATTTGCAAGTGATTGAACATCTGACCTTGTCTGAAAATG
AAGCCACCATTGCAACACCCATTGTCAAGGAAATCAAGGATCGCCTGTCCTTCCTAAATAACGTTGGTCTCAACTATCTG
ACTCTTTCACGAGCAGCAGGTACCCTTTCTGGTGGTGAGAGCCAGCGGATTCGTCTGGCGACTCAGATTGGCTCTAACCT
GTCTGGTGTCCTCTATATTCTGGATGAGCCGTCGATTGGTCTGCACCAGCGGGACAATGACCGTCTGATTGCTAGTCTTA
AGAAAATGCGTGATTTGGGCAATACATTGATTGTGGTGGAGCATGATGAGGACACTATGCGTGAGGCAGATTGGTTAATC
GATATTGGACCTGGTGCTGGTGTGTTTGGTGGAGAGGTTGTTGCTTCCGGGACTCCGGATCAAGTTGCTAAAAATAAAAA
GTCTATTACAGGCCAGTACCTTTCTGGGAAGCGCCAAATTCCAGTTCCTTTAGAGCGCCGTGTTGGAAATGGTCGCTTCT
TAGAGGTGATCGGTGCCAAGGAAAACAACCTGCAAGACGTGACGGTTCGTTTCCCACTTGGAAAATTTGTGGCGGTGACA
GGGGTGTCTGGCTCTGGTAAGTCAACTCTGGTCAACTCCATTTTGAAAAAAGCCATTGCTCAGAAGCTCAATCGTAATTC
GGACAAGCCAGGTAAATTCAAGTCTATTTCAGGAATTGAACACTTGGATCGCTTGATTGATATTGACCAAAGTCCGATTG
GACGGACACCGCGTTCCAACCCAGCTACCTACACAGGTGTCTTCGATGATATTCGGGATTTGTTTGCCCAGACTAATGAA
GCCAAGATTCGTGGCTACAAGAAGGGTCGGTTCTCCTTTAACGTCAAAGGTGGACGTTGTGAAGCTTGTTCTGGTGACGG
GATTATCAAGATTGAAATGCACTTCCTGCCAGATGTCTTTGTTCCTTGCGAAGTCTGTCATGGACACCGTTACAATTCTG
AAACCTTGGAAGTACATTACAAGGAGAAAAATATTGCCCAAGTCCTTGATATGACGGTCAATGACGCGGTCGAGTTCTTC
AAACACATTCCGAAAATTGAGCGCAAACTCCGTACCATTCAAGATGTGGGCTTGGGCTACGTTACTCTAGGTCAGCCAGC
AACCACTCTATCAGGTGGGGAAGCTCAACGGATGAAGTTGGCTTCTGAACTCCACAAGCGGTCAACTGGTAAATCCCTCT
ATATCTTGGATGAGCCGACGACTGGCCTGCATACTGAGGACATTGCCCAGTTGCTCAAGGTCTTAGCCCGCTTTGTTGAT
GATGGAAATACCGTGCTGGTCATCGAGCACAATCTGGATGTTATCAAGACAGCCGACCACATTATCGATATGGGACCGGA
AGGCGGTGTCGGCGGTGGTACCGTTGTTGCGACAGGGACACCAGAAGAAGTGGCGGAGAACCCAGCCAGCTTTACAGGTC
AGTATTTGAAAACCAAGTTGAAGTAA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(132-238)

UvrA DNA-binding domain (UvrA_DNA-bind)

(288-396)

ABC transporter (ABC_tran)

(624-860)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

89.255

99.894

0.892
  uvrA Streptococcus pneumoniae TIGR4

89.255

99.894

0.892
  uvrA Streptococcus pneumoniae D39

89.255

99.894

0.892