Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   JZY07_RS08760 Genome accession   NZ_CP071305
Coordinates   1761280..1762941 (-) Length   553 a.a.
NCBI ID   WP_024412069.1    Uniprot ID   -
Organism   Streptococcus suis strain SC183     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1756280..1767941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZY07_RS08735 (JZY07_08735) - 1757609..1758076 (-) 468 WP_024400278.1 GNAT family N-acetyltransferase -
  JZY07_RS08740 (JZY07_08740) - 1758595..1758870 (-) 276 WP_024385016.1 HU family DNA-binding protein -
  JZY07_RS08745 (JZY07_08745) - 1758960..1759556 (-) 597 WP_024412067.1 YpmS family protein -
  JZY07_RS08750 (JZY07_08750) - 1759528..1760360 (-) 833 Protein_1699 SGNH/GDSL hydrolase family protein -
  JZY07_RS08755 (JZY07_08755) - 1760353..1761186 (-) 834 WP_024412068.1 DegV family protein -
  JZY07_RS08760 (JZY07_08760) recN 1761280..1762941 (-) 1662 WP_024412069.1 DNA repair protein RecN Machinery gene
  JZY07_RS08765 (JZY07_08765) - 1762944..1763369 (-) 426 WP_002936261.1 arginine repressor -
  JZY07_RS08770 (JZY07_08770) - 1763362..1764183 (-) 822 WP_024393822.1 TlyA family RNA methyltransferase -
  JZY07_RS08775 (JZY07_08775) - 1764176..1765045 (-) 870 WP_024412070.1 polyprenyl synthetase family protein -
  JZY07_RS08780 (JZY07_08780) - 1765045..1765260 (-) 216 WP_002936269.1 exodeoxyribonuclease VII small subunit -
  JZY07_RS08785 (JZY07_08785) xseA 1765235..1766578 (-) 1344 WP_024412071.1 exodeoxyribonuclease VII large subunit -
  JZY07_RS08790 (JZY07_08790) - 1766745..1767653 (+) 909 WP_024412072.1 neutral zinc metallopeptidase -

Sequence

Protein


Download         Length: 553 a.a.        Molecular weight: 62749.89 Da        Isoelectric Point: 4.6542

>NTDB_id=476709 JZY07_RS08760 WP_024412069.1 1761280..1762941(-) (recN) [Streptococcus suis strain SC183]
MLLEVSIKNFAIIEQVSLNFENGMTILSGETGAGKSIIIDAMNLMLGARATTDVIRHGATKAEIEGLFSFENSRALEQIL
LEQGIEVADELIIRREILQNGRSVSRVNGQMVNLSVLKQIGQYLVDIHGQHDQEELMKSQHHIRLLDSFGEDEFWSLKDR
YQTTFDAYRSLRKRVLEKQKNEQEHKARIEMLEYQIAEIEAADLKSGEDIQLNQERDKLLNHKQIADTLTNAYALLDNED
FSSLNNLRSAMSDLQSLEEFDSDYKQLSSSLTEAYYVVEDVTKRLSDVVDNLDFDGNRLLQLESRLDLLNTITKKYGGTV
DDVLDYFSKISEEYNLLTGNDLSGDDLEVQLKNLEKELVERAGQLSQSRHELAVVLEDIIRQELQDLYMEKARFQVRFTK
GKFNREGNETVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFARKEGKTSIVFDEVDTGVSGRVAQAIAQKIYKIG
QYGQVLAISHLPQVIAIADYQFFIEKISDEHSTVSRVRLLTKEERIEEIAKMLAGDKITDAARNQAKELVEKG

Nucleotide


Download         Length: 1662 bp        

>NTDB_id=476709 JZY07_RS08760 WP_024412069.1 1761280..1762941(-) (recN) [Streptococcus suis strain SC183]
ATGTTACTAGAAGTGTCCATTAAAAACTTCGCCATTATTGAGCAGGTATCACTGAATTTTGAAAACGGGATGACCATCCT
ATCTGGTGAAACAGGGGCAGGAAAGTCTATTATCATCGATGCCATGAACCTGATGTTAGGGGCGCGTGCGACGACAGATG
TTATCAGACATGGGGCCACCAAGGCTGAGATTGAAGGGCTCTTTTCCTTTGAAAATAGCAGAGCTCTCGAGCAGATTTTG
CTTGAACAGGGGATTGAAGTAGCTGACGAGCTCATTATCCGTCGCGAAATCCTACAAAATGGCCGTTCGGTCAGTCGTGT
CAATGGACAAATGGTCAATTTATCTGTCTTGAAACAGATTGGGCAATATTTAGTAGATATTCATGGTCAACATGACCAGG
AAGAATTGATGAAATCCCAGCACCATATCCGTCTTTTGGACAGTTTCGGAGAAGATGAGTTTTGGAGTCTTAAAGACCGT
TATCAGACAACCTTTGATGCCTATCGTAGTCTTCGCAAACGAGTTCTTGAAAAGCAAAAAAATGAGCAAGAACACAAGGC
GCGGATTGAGATGTTGGAATACCAAATTGCTGAAATCGAAGCAGCGGATTTGAAGTCTGGGGAAGATATTCAACTCAATC
AGGAACGCGATAAACTGCTCAACCACAAACAAATTGCAGATACACTGACCAATGCCTATGCACTGTTAGACAATGAAGAT
TTTTCAAGCTTGAACAACCTACGCTCAGCTATGAGTGACTTGCAAAGTCTGGAAGAATTTGATTCAGACTACAAACAGCT
CTCTTCTAGCCTGACAGAAGCTTATTATGTCGTTGAAGATGTGACCAAGCGTCTCAGCGATGTGGTGGACAATCTAGACT
TTGACGGCAATCGTCTCTTGCAATTGGAAAGTCGTCTGGATTTGCTCAATACCATTACGAAGAAATATGGTGGAACTGTC
GATGATGTTTTGGACTATTTTAGTAAAATCAGCGAAGAATACAATCTATTGACAGGCAATGATTTATCTGGTGATGATTT
GGAAGTTCAGCTTAAGAACTTAGAGAAAGAATTGGTTGAACGAGCAGGTCAGCTCAGCCAATCACGCCATGAATTAGCTG
TTGTTTTAGAAGATATTATCCGCCAAGAATTGCAAGACTTGTATATGGAGAAAGCTCGTTTCCAAGTTCGATTTACCAAA
GGAAAATTTAATCGAGAAGGAAATGAAACGGTAGAATTTTATATATCCACCAACCCTGGAGAAGACTTCAAACCTCTCGT
TAAGGTGGCTTCTGGAGGAGAATTGTCTCGCTTGATGTTGGCCATTAAGTCAGCCTTTGCCCGTAAAGAAGGTAAAACAT
CTATTGTCTTTGATGAGGTGGATACAGGGGTATCTGGACGTGTGGCCCAGGCAATTGCCCAGAAAATTTATAAAATCGGA
CAATATGGGCAAGTATTGGCGATTTCTCATCTACCACAAGTCATTGCCATCGCAGATTATCAGTTTTTTATTGAGAAAAT
ATCCGACGAACATTCGACCGTTTCTCGTGTCCGTCTCTTGACCAAAGAAGAGCGTATTGAGGAAATTGCCAAGATGTTAG
CCGGTGACAAAATCACAGATGCAGCCCGTAATCAAGCAAAAGAATTAGTAGAAAAAGGTTAG

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.509

100

0.448