Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   JZY07_RS06495 Genome accession   NZ_CP071305
Coordinates   1283794..1287060 (-) Length   1088 a.a.
NCBI ID   WP_024412292.1    Uniprot ID   -
Organism   Streptococcus suis strain SC183     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1278794..1292060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZY07_RS06485 (JZY07_06485) plsY 1279486..1280130 (+) 645 WP_024412294.1 glycerol-3-phosphate 1-O-acyltransferase PlsY -
  JZY07_RS06490 (JZY07_06490) rexA 1280141..1283794 (-) 3654 WP_024412293.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  JZY07_RS06495 (JZY07_06495) rexB 1283794..1287060 (-) 3267 WP_024412292.1 ATP-dependent nuclease subunit B Machinery gene
  JZY07_RS06500 (JZY07_06500) - 1287355..1291158 (-) 3804 WP_024412291.1 MucBP domain-containing protein -
  JZY07_RS06505 (JZY07_06505) - 1291522..1291686 (-) 165 WP_024393955.1 hypothetical protein -
  JZY07_RS06510 (JZY07_06510) - 1291742..1291903 (-) 162 WP_153309170.1 hypothetical protein -

Sequence

Protein


Download         Length: 1088 a.a.        Molecular weight: 124559.84 Da        Isoelectric Point: 5.2443

>NTDB_id=476700 JZY07_RS06495 WP_024412292.1 1283794..1287060(-) (rexB) [Streptococcus suis strain SC183]
MKLVYTDIRNPLTQYLTDTAAEFAKEAKRVFYIAPNSLSFEMERKVLKYLPEQATFDIIVTRFGQLARYLMIDRKESGQP
LDDVGLAMIFFRVLSQFEDGDLKVYGRLQTDFGFINQLVALYKELQRANMSILDLEAMESPDKQADLVKIFLAVTDVLSK
EGFEHQSKLAQLTRLVDTGQLDEQLKNIVLVVDGFSRFSAEEEALVSALNERVSEILIGVYASKKAVQVTYAEGNVYQAN
VDFLRQLSAQFQTKATYIGQEPVLDSIGKFSKNMEAYYDFSGTMIDLTPADQEKIQLWEVVNQKEEVEQVATAIRQHVHQ
GARYKDILLLLGDVDSYKLQIGKIFDKYDIPYYFGKAEEMSHHPLVHFVESLERLRRYRFRAEDLLNLLKSGLYASISQK
ELDLFESYILFADMKGQAAFSRAFSVNGRADYDVETVKEKRLVYDLNVLEPLRAKIMEPLNQLFKAGPQSGTALLEKFMA
FLEAIELPKNMEKMSRNLSEVEQEKEEQVWKSFTHILENFHQIFGKEKLKMDDFLAILQAGMQASHYRTVPATVDVVNVK
SYDLIEPHTAKYVYAIGMGQSNFPKVAKNTSLLTEEEMEKVNLVSASSSRFDLVSRENIKKNHAAMMSLLNAATEQLVIS
TPQIYNEGEDSLSPYIKILQKMGLKSEERGRMKTLSPQDIGHYKSLLSRLIESERPSLDHEEWEGQTAFWTVLVRHLKKK
LESQGIEIPTITGEITSKQLAADTLAALYPEDKPLNLSASSLTNFYNNQYLYFVRNVLRLREQESIHPTAFQHGLFLHRI
FERVVMDQSDLDFDQKVDKAILRTRDEAEFAMFYNQDADARYTEEVLDRIARSSATILRDNDLVEIDGQEKSFRQDKALV
FDLQNGKSVHVNGTIDRLDTLQINQAVGVVDYKSSDQSFSVGDFYNGLKPQLVTYLAALQELDETKDKSVFGAMYLHLQD
PIIKLKDTKNLEQLEGAANTSLVYKGLFLKEESLGLNHFYQTRNQLYTEDEFAVLLNHNQELYKQAAKDILDGRFAINPY
TKDGRSVAGEQLKAITGFEADRHMGMARRLIKEAKRQDWMERMKGGQD

Nucleotide


Download         Length: 3267 bp        

>NTDB_id=476700 JZY07_RS06495 WP_024412292.1 1283794..1287060(-) (rexB) [Streptococcus suis strain SC183]
ATGAAATTAGTCTATACAGATATTCGCAATCCTCTGACGCAGTATTTAACGGATACCGCAGCAGAATTTGCTAAGGAAGC
TAAGCGAGTTTTTTACATTGCTCCAAACTCTCTATCCTTTGAGATGGAGCGCAAGGTCTTGAAATACCTGCCTGAACAGG
CAACTTTTGATATTATCGTGACCCGTTTTGGGCAATTGGCCCGCTATTTGATGATTGATAGGAAAGAATCAGGTCAACCG
CTGGATGATGTTGGTCTTGCCATGATTTTCTTTCGTGTTCTATCACAATTTGAAGACGGCGACTTGAAAGTCTATGGTCG
TTTACAGACAGATTTTGGGTTCATTAACCAGCTAGTTGCTTTATACAAAGAATTGCAACGGGCAAATATGTCTATTTTGG
ACTTGGAAGCCATGGAGTCACCAGATAAGCAGGCTGATTTGGTAAAGATTTTTCTGGCTGTAACAGACGTTTTGTCCAAA
GAAGGCTTTGAGCATCAGTCTAAGTTAGCACAGCTGACTCGCTTGGTAGATACTGGTCAGTTGGATGAGCAGTTGAAGAA
CATTGTGCTGGTGGTAGACGGATTTTCTCGTTTTTCGGCAGAAGAAGAAGCTTTAGTAAGTGCTTTAAATGAACGAGTGT
CGGAAATCCTGATTGGTGTATATGCCAGCAAGAAAGCTGTGCAAGTGACCTATGCGGAAGGGAACGTTTATCAAGCCAAT
GTTGACTTTTTACGTCAGTTATCAGCGCAGTTCCAGACTAAGGCTACTTATATTGGTCAAGAGCCAGTCTTGGACAGTAT
CGGTAAATTTTCAAAGAATATGGAAGCCTATTATGACTTCAGCGGGACCATGATAGACTTGACTCCAGCAGACCAAGAAA
AAATCCAACTATGGGAAGTCGTCAACCAAAAAGAAGAAGTTGAGCAGGTTGCGACTGCAATTCGTCAGCATGTGCATCAA
GGGGCTCGCTATAAAGACATCTTGTTGCTCTTGGGTGATGTGGATAGCTACAAGTTGCAGATTGGCAAGATTTTTGACAA
GTATGATATTCCTTACTATTTTGGTAAGGCAGAGGAGATGAGTCATCATCCCCTGGTCCATTTTGTGGAGTCCTTGGAGC
GCTTGCGTCGCTATCGTTTCCGTGCGGAAGACCTGCTCAATCTCCTCAAATCTGGTTTGTACGCCAGCATTTCCCAAAAG
GAGCTGGACCTATTTGAGTCTTACATCCTCTTTGCGGATATGAAGGGGCAGGCTGCTTTTTCGAGGGCTTTTTCGGTCAA
TGGCAGAGCGGACTACGATGTTGAGACTGTCAAGGAGAAGCGACTTGTCTATGATTTGAATGTCTTGGAACCCCTACGTG
CTAAGATTATGGAGCCTTTGAACCAGCTGTTTAAGGCTGGACCACAATCTGGAACTGCCTTGCTTGAGAAATTTATGGCA
TTTTTGGAGGCAATTGAGCTTCCTAAAAATATGGAAAAAATGTCTCGAAATTTGAGTGAGGTAGAGCAAGAAAAAGAAGA
GCAGGTCTGGAAAAGTTTTACCCATATTCTAGAGAATTTTCATCAGATTTTCGGAAAAGAAAAATTGAAAATGGATGATT
TTCTGGCTATTTTACAGGCTGGTATGCAGGCCAGTCACTATCGTACCGTTCCTGCAACGGTTGATGTGGTCAATGTCAAA
TCCTATGATTTGATCGAGCCACACACTGCAAAGTATGTTTATGCTATCGGAATGGGCCAGTCCAATTTTCCAAAAGTTGC
TAAGAATACCAGTCTATTGACAGAAGAAGAGATGGAAAAAGTCAATCTTGTTTCGGCTAGCTCTTCACGTTTTGATTTGG
TCAGTCGAGAGAATATCAAGAAGAACCATGCTGCCATGATGTCTCTGCTGAATGCTGCGACGGAACAGTTAGTCATTTCA
ACTCCTCAGATATATAACGAAGGCGAGGATAGTCTCTCCCCTTATATCAAGATTCTCCAAAAAATGGGGCTGAAATCCGA
AGAACGTGGTCGGATGAAAACACTTAGTCCACAAGACATCGGTCACTACAAGAGTCTCTTATCCCGTTTGATTGAGTCAG
AAAGACCATCTCTTGATCATGAAGAATGGGAAGGGCAGACGGCCTTCTGGACAGTCTTGGTTCGCCATTTGAAGAAGAAA
TTGGAGTCGCAAGGCATTGAAATTCCGACCATTACTGGCGAAATTACTTCTAAACAGCTTGCAGCTGATACCTTGGCTGC
TTTATATCCAGAGGATAAGCCACTCAATCTTTCTGCATCCAGCTTGACCAATTTCTACAATAACCAATACCTTTACTTTG
TCCGTAATGTTCTTCGCTTGCGGGAACAGGAATCCATCCATCCGACTGCCTTTCAGCATGGTTTGTTCTTGCATCGGATT
TTTGAAAGAGTGGTCATGGACCAATCTGATCTAGATTTTGATCAAAAAGTGGACAAGGCCATCCTGCGTACGCGTGACGA
GGCAGAATTTGCTATGTTTTATAATCAAGATGCGGATGCTCGTTATACGGAGGAGGTACTGGATAGGATTGCTCGTTCCA
GTGCGACTATTTTGCGGGATAATGATTTGGTTGAAATTGATGGCCAGGAAAAGAGTTTCCGTCAGGATAAGGCGCTGGTT
TTTGACCTTCAAAATGGCAAGAGTGTGCATGTAAATGGTACCATTGACCGCTTGGATACCTTACAAATCAATCAGGCTGT
CGGTGTTGTGGATTACAAGTCCAGCGACCAATCTTTTTCAGTTGGGGATTTTTACAATGGTCTAAAACCTCAGTTGGTCA
CCTACCTGGCAGCCTTACAAGAGCTGGATGAAACCAAGGATAAATCTGTTTTTGGTGCTATGTATTTACATTTGCAGGAT
CCGATTATCAAGTTAAAAGATACGAAGAATTTAGAACAGCTAGAAGGAGCTGCCAATACGAGCTTGGTTTACAAGGGGCT
TTTCTTGAAGGAGGAAAGTCTGGGGCTCAATCATTTTTATCAGACTCGTAATCAACTCTACACGGAAGATGAGTTTGCGG
TTTTATTGAACCACAACCAAGAACTCTACAAACAAGCTGCCAAGGACATCCTGGATGGTCGCTTTGCTATTAACCCTTAT
ACCAAAGATGGGCGTTCGGTGGCAGGTGAGCAGCTGAAGGCAATAACTGGTTTTGAGGCGGATCGGCACATGGGTATGGC
ACGGCGGTTGATCAAAGAGGCCAAGCGTCAAGATTGGATGGAACGAATGAAAGGAGGTCAGGACTAA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(757-1042)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

44.787

100

0.454