Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   JZY07_RS02110 Genome accession   NZ_CP071305
Coordinates   400594..401211 (-) Length   205 a.a.
NCBI ID   WP_024408083.1    Uniprot ID   -
Organism   Streptococcus suis strain SC183     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 395594..406211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZY07_RS02090 (JZY07_02090) - 395692..395895 (+) 204 WP_004195223.1 cold-shock protein -
  JZY07_RS02095 (JZY07_02095) - 396200..397364 (+) 1165 Protein_379 IS110 family transposase -
  JZY07_RS02100 (JZY07_02100) rsmG 397667..398380 (-) 714 WP_024408081.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  JZY07_RS02105 (JZY07_02105) pbp1a 398439..400580 (-) 2142 WP_032500672.1 penicillin-binding protein PBP1A -
  JZY07_RS02110 (JZY07_02110) recU 400594..401211 (-) 618 WP_024408083.1 Holliday junction resolvase RecU Machinery gene
  JZY07_RS02115 (JZY07_02115) - 401278..401817 (+) 540 WP_004194171.1 DUF1273 domain-containing protein -
  JZY07_RS02120 (JZY07_02120) gpsB 401888..402223 (+) 336 WP_004194167.1 cell division regulator GpsB -
  JZY07_RS02130 (JZY07_02130) - 402780..403946 (+) 1167 WP_024412397.1 class I SAM-dependent RNA methyltransferase -
  JZY07_RS02135 (JZY07_02135) - 403956..405410 (+) 1455 WP_024412396.1 cell division site-positioning protein MapZ family protein -
  JZY07_RS02140 (JZY07_02140) - 405632..406114 (-) 483 WP_004194159.1 S-ribosylhomocysteine lyase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23544.14 Da        Isoelectric Point: 9.9427

>NTDB_id=476664 JZY07_RS02110 WP_024408083.1 400594..401211(-) (recU) [Streptococcus suis strain SC183]
MVNYPHKVTKKINRTSSVSAQKISFANRGMSFEAAINDSNHYYLAQEIAVIHKKPTPVQIVKVDYPKRSRAKITEAYFRQ
ASTTDYSGVFKSRYIDFEAKETRQKASMPMKNFHEHQIEHMKQVVKQGGICFVLLHFSALKETYLLPASPLIKFYQIDKG
SKSMPLDYIRDNGYKIVMGGFPSIPYLEIVEKKLLGGDSFENYND

Nucleotide


Download         Length: 618 bp        

>NTDB_id=476664 JZY07_RS02110 WP_024408083.1 400594..401211(-) (recU) [Streptococcus suis strain SC183]
ATGGTCAATTATCCCCATAAGGTAACCAAAAAAATCAATAGAACCAGTTCAGTTTCAGCTCAAAAAATTAGTTTTGCAAA
TCGTGGAATGTCTTTCGAAGCGGCAATCAACGATAGTAATCACTATTATCTTGCACAGGAAATCGCTGTGATACATAAAA
AACCCACACCTGTACAAATAGTGAAAGTCGACTACCCTAAACGTAGTCGTGCAAAAATTACAGAAGCTTACTTCCGACAA
GCTTCTACAACTGATTACTCTGGGGTCTTTAAGAGTCGATATATTGATTTTGAAGCAAAAGAAACCCGACAAAAGGCATC
TATGCCTATGAAAAATTTTCACGAACATCAAATTGAGCATATGAAACAGGTTGTGAAACAAGGTGGTATTTGTTTTGTCC
TTCTTCACTTTTCAGCATTGAAAGAAACATATTTATTGCCAGCTAGTCCCCTTATCAAATTCTATCAAATTGATAAAGGA
AGCAAATCTATGCCCTTGGATTATATTCGGGACAATGGCTATAAAATTGTTATGGGGGGCTTTCCAAGTATCCCATATCT
AGAGATTGTTGAAAAAAAATTATTAGGTGGTGACTCTTTTGAAAACTACAACGATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(28-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

52.284

96.098

0.502