Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   JZY07_RS00210 Genome accession   NZ_CP071305
Coordinates   28818..29600 (+) Length   260 a.a.
NCBI ID   WP_024412036.1    Uniprot ID   -
Organism   Streptococcus suis strain SC183     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 23818..34600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZY07_RS00190 (JZY07_00190) mreD 24639..25154 (+) 516 WP_002935339.1 rod shape-determining protein MreD -
  JZY07_RS00195 (JZY07_00195) - 25239..26495 (+) 1257 WP_024399951.1 CHAP domain-containing protein -
  JZY07_RS00200 (JZY07_00200) - 26598..27566 (+) 969 WP_024383100.1 ribose-phosphate diphosphokinase -
  JZY07_RS00205 (JZY07_00205) - 27653..28831 (+) 1179 WP_024399952.1 pyridoxal phosphate-dependent aminotransferase -
  JZY07_RS00210 (JZY07_00210) recO 28818..29600 (+) 783 WP_024412036.1 DNA repair protein RecO Machinery gene
  JZY07_RS00215 (JZY07_00215) plsX 29597..30604 (+) 1008 WP_015646216.1 phosphate acyltransferase PlsX -
  JZY07_RS00220 (JZY07_00220) - 30597..30845 (+) 249 WP_014637254.1 phosphopantetheine-binding protein -
  JZY07_RS00225 (JZY07_00225) purC 30963..31670 (+) 708 WP_024399953.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 30499.00 Da        Isoelectric Point: 5.4193

>NTDB_id=476638 JZY07_RS00210 WP_024412036.1 28818..29600(+) (recO) [Streptococcus suis strain SC183]
MERIETRGLVLYNRNFREDDKLVKIFTERAGKRMFFVKHASKSKLVASIQPLTYADFIVKINDDGLSYIEDFHQVQPFKN
INGDIFKLSYATYILALADAALQDKVYDPALFAFLVKTLDLMESGLDYEVLTNIFEIQLMGRFGISLNFHECAFCHRVGL
PFDYSYKYSGVLCPQHYQQDERRAYLDPNVPYLLDQFQAISFDELETISIKPEMKRKLRLFIDQLYEEYVGIHLKSKKFI
DDLSSWGQIMKPRTENEETE

Nucleotide


Download         Length: 783 bp        

>NTDB_id=476638 JZY07_RS00210 WP_024412036.1 28818..29600(+) (recO) [Streptococcus suis strain SC183]
ATGGAACGAATTGAAACCAGGGGATTAGTCCTATATAATCGGAATTTTCGAGAAGACGACAAGCTGGTCAAGATTTTTAC
GGAGAGGGCTGGCAAGCGAATGTTTTTCGTGAAACACGCCTCTAAGTCCAAGCTGGTAGCTTCTATCCAGCCTTTGACCT
ATGCGGATTTTATCGTTAAAATCAATGATGATGGTCTGTCTTATATCGAAGATTTTCATCAGGTACAGCCCTTTAAGAAT
ATTAACGGTGATATTTTCAAGCTTAGCTATGCTACCTATATCTTGGCCTTGGCCGATGCGGCCTTGCAGGACAAGGTCTA
TGACCCAGCTCTCTTTGCTTTTTTGGTCAAGACCTTGGACTTGATGGAGTCAGGTTTGGACTACGAAGTTCTGACCAATA
TCTTTGAAATTCAGCTCATGGGTCGATTTGGGATCAGTCTGAATTTTCACGAGTGTGCTTTTTGTCATCGGGTTGGCTTG
CCTTTTGACTATTCCTACAAGTACAGCGGTGTCTTGTGTCCACAACACTATCAACAAGATGAGCGACGGGCTTATCTGGA
TCCCAATGTTCCCTATCTACTTGATCAATTTCAGGCTATTTCCTTTGATGAGCTGGAAACCATTTCCATCAAGCCTGAGA
TGAAGCGAAAATTACGGCTTTTTATTGACCAGCTGTACGAGGAATATGTGGGGATTCACTTGAAATCCAAGAAATTTATA
GATGATTTGTCTTCTTGGGGGCAGATTATGAAACCAAGAACAGAAAATGAGGAAACAGAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-78)

Recombination protein O C terminal (RecO_C)

(84-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

69.323

96.538

0.669