Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   ATM22_RS01315 Genome accession   NZ_CP060528
Coordinates   310049..310714 (+) Length   221 a.a.
NCBI ID   WP_002447011.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain LM087     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 305049..315714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATM22_RS01300 (ATM22_01285) - 306405..307949 (+) 1545 WP_002493793.1 NAD(P)H-binding protein -
  ATM22_RS01305 (ATM22_01290) - 308072..309541 (-) 1470 WP_002437984.1 alkaline phosphatase -
  ATM22_RS01310 (ATM22_01295) - 309839..310018 (+) 180 WP_002447010.1 hypothetical protein -
  ATM22_RS01315 (ATM22_01300) braR 310049..310714 (+) 666 WP_002447011.1 response regulator transcription factor Regulator
  ATM22_RS01320 (ATM22_01305) braS 310720..311616 (+) 897 WP_002494881.1 HAMP domain-containing sensor histidine kinase Regulator
  ATM22_RS01325 (ATM22_01310) - 311727..312476 (+) 750 WP_001830627.1 ABC transporter ATP-binding protein -
  ATM22_RS01330 (ATM22_01315) - 312478..314490 (+) 2013 WP_002456335.1 ABC transporter permease -
  ATM22_RS01335 (ATM22_01320) - 314594..315184 (+) 591 WP_002493795.1 DUF4064 domain-containing protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25643.77 Da        Isoelectric Point: 5.1924

>NTDB_id=476590 ATM22_RS01315 WP_002447011.1 310049..310714(+) (braR) [Staphylococcus epidermidis strain LM087]
MKIFIVEDDLVIAESLANELSKWNYEVHVIDNFEKIMEDFRRVEPQLVLLDINLPTLNGFHWCQEIRKVSRVPIMFISSR
TDNMDQILAIQMGGDDFIEKPFNLSLTVAKIQALLRRTYDLSIARDEIAVKGCKLIVDEAKLSKDNEHVQLSLTELQILK
LLFQNENKYVSRTALIEKCWESENFIDDNTLAVNMTRLRKKLLSIGVDNLIETKKNVGYRV

Nucleotide


Download         Length: 666 bp        

>NTDB_id=476590 ATM22_RS01315 WP_002447011.1 310049..310714(+) (braR) [Staphylococcus epidermidis strain LM087]
ATGAAGATTTTCATTGTAGAAGACGATTTAGTGATTGCTGAAAGTTTAGCTAATGAGCTATCTAAATGGAATTATGAGGT
TCATGTGATTGATAATTTTGAAAAGATAATGGAAGATTTTCGCAGAGTAGAACCACAACTCGTATTATTAGATATCAATC
TACCAACACTTAATGGCTTCCATTGGTGCCAAGAAATACGAAAAGTATCTCGTGTGCCTATTATGTTTATTAGTTCAAGA
ACAGATAATATGGATCAAATTCTGGCTATCCAAATGGGTGGCGATGATTTTATCGAGAAACCATTTAACTTGTCTTTAAC
AGTAGCTAAAATTCAGGCACTATTGCGTCGCACATATGATTTATCAATAGCTCGTGATGAAATAGCTGTTAAAGGTTGTA
AACTAATTGTTGATGAGGCGAAGCTTAGCAAGGATAATGAACATGTTCAACTTTCCTTAACAGAGCTGCAGATATTAAAA
TTGTTATTTCAAAATGAAAATAAATATGTAAGTCGTACAGCTTTAATTGAGAAATGTTGGGAGTCTGAGAATTTTATTGA
TGACAATACGCTAGCAGTAAATATGACGAGATTACGAAAAAAATTACTTTCTATCGGTGTCGATAATTTAATTGAGACAA
AGAAAAATGTAGGATACAGGGTTTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-111)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

78.733

100

0.787