Detailed information NTG0476587

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: JWY36_RS13285
• Genome accession: NZ_CP071276
• Coordinates: 2462264..2463391 (-)
• Length: 375 a.a.
• NCBI ID: WP_014480328.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain JNFE0126
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 2457264..2468391

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JWY36_RS13260	-	2457311..2457523 (-)	213	Protein_2577	recombinase family protein	-
JWY36_RS13265 (JWY36_13155)	fumC	2457742..2459130 (-)	1389	WP_014480325.1	class II fumarate hydratase	-
JWY36_RS13270 (JWY36_13160)	-	2459297..2460187 (+)	891	WP_014480326.1	LysR family transcriptional regulator	-
JWY36_RS13275 (JWY36_13165)	-	2461129..2461524 (+)	396	WP_014480327.1	VOC family protein	-
JWY36_RS13285 (JWY36_13170)	rapC	2462264..2463391 (-)	1128	WP_014480328.1	Rap family tetratricopeptide repeat protein	Regulator
JWY36_RS22540	-	2463573..2464406 (+)	834	Protein_2582	ribonuclease YeeF family protein	-
JWY36_RS22545	-	2464792..2465499 (+)	708	WP_014480330.1	hypothetical protein	-
JWY36_RS13300 (JWY36_13180)	-	2465513..2465800 (+)	288	WP_014480331.1	hypothetical protein	-
JWY36_RS13305 (JWY36_13185)	-	2466203..2466643 (+)	441	WP_014480332.1	SMI1/KNR4 family protein	-
JWY36_RS13310 (JWY36_13190)	-	2466742..2467194 (+)	453	WP_014480333.1	SMI1/KNR4 family protein	-
JWY36_RS13315 (JWY36_13195)	cdiI	2467291..2467650 (+)	360	WP_014480334.1	ribonuclease toxin immunity protein CdiI	-
JWY36_RS13320 (JWY36_13200)	-	2467755..2468234 (+)	480	WP_224588637.1	hypothetical protein	-

Sequence

Protein

• Length: 375 a.a.
• Molecular weight: 44149.36 Da
• Isoelectric Point: 6.0289

>NTDB_id=476587 JWY36_RS13285 WP_014480328.1 2462264..2463391(-) (rapC) [Bacillus subtilis strain JNFE0126]
MNPVLSSSEVGVKINEWYKMIRQFSVPDAEILKAEVEQEIQRMEEDEYLLIYFSLMKFRHQLMLDYLEPVTTRIRPTIEE
LLEKIETSNKGISGLLSYYSLFFRGMYEFDKKQYMKAIYYYREAEKQLIHVPDEIERAEFHFKLAEAYYGMKQSHVSMHH
VKQALDIYNQYELYKVRKVQCMFVISGNYTDFKHYEKSQPHLEKALKLSRELNNKRLISSALYNLGTNFADSGDYEQAEV
YIKQAVEITEKEKLTNLPHSLFSYAKILFKQGKMNEAIQVSKKGLSAALYQGDELFAKLQGYLNALYVDAVDQQGVNKTI
EYLEKNKNYSYIEDIACETAAAYANSKEFETSYVYHQKMLETQTQIQRGECLYDF

Nucleotide

• Length: 1128 bp

>NTDB_id=476587 JWY36_RS13285 WP_014480328.1 2462264..2463391(-) (rapC) [Bacillus subtilis strain JNFE0126]
GTGAATCCGGTTTTATCATCGTCAGAAGTTGGCGTAAAGATCAATGAATGGTATAAAATGATACGTCAATTTAGTGTCCC
GGATGCAGAGATTTTAAAGGCAGAGGTCGAGCAAGAAATCCAACGGATGGAGGAAGATGAGTATTTACTCATTTACTTCT
CCTTAATGAAATTCCGTCATCAGCTCATGTTAGATTATTTGGAACCCGTAACGACACGTATAAGACCAACTATTGAGGAA
CTTCTTGAAAAAATTGAGACTTCAAATAAAGGCATATCTGGCCTGTTATCGTATTATTCTCTGTTTTTCAGAGGGATGTA
CGAGTTTGATAAGAAGCAATACATGAAAGCTATCTACTATTATAGAGAAGCCGAAAAGCAGCTTATACATGTCCCTGATG
AGATCGAAAGGGCAGAGTTTCATTTTAAGTTAGCTGAAGCATATTATGGTATGAAGCAAAGTCATGTGTCTATGCATCAC
GTTAAACAAGCGTTGGATATTTATAATCAATATGAACTTTATAAGGTGCGAAAAGTTCAATGTATGTTTGTTATCTCAGG
GAATTATACTGATTTTAAACATTACGAAAAAAGTCAGCCGCATCTTGAAAAGGCATTAAAGTTATCTAGGGAATTGAATA
ACAAAAGGTTGATTAGTTCTGCACTATATAATTTAGGCACTAATTTTGCTGACAGTGGTGATTACGAGCAGGCGGAAGTA
TACATAAAGCAAGCAGTGGAGATTACAGAAAAAGAAAAGCTCACAAACTTGCCACATTCTTTATTTTCTTATGCAAAAAT
CCTTTTTAAACAAGGAAAAATGAATGAGGCTATCCAAGTAAGTAAGAAAGGTTTGTCAGCAGCTCTTTATCAAGGTGATG
AGCTTTTCGCAAAATTACAGGGATATTTAAATGCTCTTTATGTCGATGCAGTGGACCAACAAGGTGTTAATAAAACCATA
GAATACTTAGAAAAAAATAAGAACTATTCATATATTGAAGACATTGCCTGTGAGACCGCAGCTGCTTACGCAAACTCAAA
AGAATTTGAAACATCCTATGTATATCATCAGAAAATGCTTGAGACTCAAACACAAATTCAAAGGGGAGAATGCCTGTATG
ACTTTTAA

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_12) (195-251)

• Tetratricopeptide repeat (TPR_8) (259-287)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	44.415	100	0.445
rapF	Bacillus subtilis subsp. subtilis str. 168	39.418	100	0.397