Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   J0G24_RS22610 Genome accession   NZ_CP071259
Coordinates   4669393..4669869 (+) Length   158 a.a.
NCBI ID   WP_001186710.1    Uniprot ID   -
Organism   Escherichia coli strain MEI005     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4664393..4674869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0G24_RS22580 (J0G24_22370) - 4665072..4665956 (+) 885 WP_001116802.1 YfjP family GTPase -
  J0G24_RS22585 (J0G24_22375) - 4666159..4666839 (+) 681 WP_001282919.1 WYL domain-containing protein -
  J0G24_RS22590 (J0G24_22380) - 4666987..4667664 (+) 678 WP_001097301.1 hypothetical protein -
  J0G24_RS22595 (J0G24_22385) - 4667670..4667903 (+) 234 WP_001278287.1 DUF905 family protein -
  J0G24_RS22600 (J0G24_22390) - 4668002..4668820 (+) 819 WP_001234631.1 DUF932 domain-containing protein -
  J0G24_RS22605 (J0G24_22395) - 4668902..4669381 (+) 480 WP_000860065.1 antirestriction protein -
  J0G24_RS22610 (J0G24_22400) radC 4669393..4669869 (+) 477 WP_001186710.1 RadC family protein Machinery gene
  J0G24_RS22615 (J0G24_22405) - 4669932..4670153 (+) 222 WP_000692303.1 DUF987 domain-containing protein -
  J0G24_RS22620 (J0G24_22410) cbeA 4670316..4670684 (+) 369 WP_001278232.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  J0G24_RS22625 (J0G24_22415) - 4670774..4671148 (+) 375 WP_000854753.1 TA system toxin CbtA family protein -
  J0G24_RS22630 (J0G24_22420) - 4671145..4671633 (+) 489 WP_000777541.1 DUF5983 family protein -
  J0G24_RS22635 (J0G24_22425) - 4671645..4671842 (+) 198 WP_000839281.1 DUF957 domain-containing protein -
  J0G24_RS22640 (J0G24_22430) - 4671939..4672508 (+) 570 WP_001290247.1 DUF4942 domain-containing protein -
  J0G24_RS25475 - 4672883..4672997 (+) 115 Protein_4452 integrase -
  J0G24_RS22645 (J0G24_22435) cadC 4673257..4674795 (+) 1539 WP_001187182.1 lysine decarboxylation/transport transcriptional activator CadC -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17630.26 Da        Isoelectric Point: 7.6151

>NTDB_id=476386 J0G24_RS22610 WP_001186710.1 4669393..4669869(+) (radC) [Escherichia coli strain MEI005]
MQQLSFLPGAMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=476386 J0G24_RS22610 WP_001186710.1 4669393..4669869(+) (radC) [Escherichia coli strain MEI005]
ATGCAACAGCTTTCCTTTCTGCCCGGAGCGATGACGCCCGGCGAGCGCAGCCTTATTCAGCGGGCCCTGAAAACCCTGGA
CCGTCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTACTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392