Detailed information NTG0476343

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: J0G24_RS05835
• Genome accession: NZ_CP071259
• Coordinates: 1192455..1193447 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain MEI005
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1187455..1198447

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J0G24_RS05805 (J0G24_05730)	ispD	1187516..1188226 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
J0G24_RS05810 (J0G24_05735)	ispF	1188226..1188705 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
J0G24_RS05815 (J0G24_05740)	truD	1188702..1189751 (+)	1050	WP_000568924.1	tRNA pseudouridine(13) synthase TruD	-
J0G24_RS05820 (J0G24_05745)	surE	1189732..1190493 (+)	762	WP_001349984.1	5'/3'-nucleotidase SurE	-
J0G24_RS05825 (J0G24_05750)	pcm	1190487..1191113 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
J0G24_RS05830 (J0G24_05755)	nlpD	1191298..1192392 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
J0G24_RS05835 (J0G24_05760)	rpoS	1192455..1193447 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
J0G24_RS05840 (J0G24_05765)	-	1193568..1193975 (-)	408	WP_001208072.1	MarR family transcriptional regulator	-
J0G24_RS05845 (J0G24_05770)	-	1194122..1194715 (+)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
J0G24_RS05850 (J0G24_05775)	-	1194715..1196142 (+)	1428	WP_000863235.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
J0G24_RS05855 (J0G24_05780)	-	1196153..1196389 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
J0G24_RS05860 (J0G24_05785)	ygbN	1196428..1197792 (-)	1365	WP_000104439.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=476343 J0G24_RS05835 WP_000081550.1 1192455..1193447(+) (rpoS) [Escherichia coli strain MEI005]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=476343 J0G24_RS05835 WP_000081550.1 1192455..1193447(+) (rpoS) [Escherichia coli strain MEI005]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCGACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGATGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTACAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715