Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   H3W50_RS02845 Genome accession   NZ_CP060441
Coordinates   590931..591545 (+) Length   204 a.a.
NCBI ID   WP_038639434.1    Uniprot ID   -
Organism   Citrobacter cronae strain S175-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 585931..596545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3W50_RS02825 - 586292..588052 (-) 1761 WP_038639423.1 AAA family ATPase -
  H3W50_RS02830 matP 588238..588690 (+) 453 WP_038639426.1 macrodomain Ter protein MatP -
  H3W50_RS02835 ompA 588789..589847 (-) 1059 WP_038639429.1 porin OmpA -
  H3W50_RS02840 sulA 590205..590714 (-) 510 WP_038639432.1 SOS-induced cell division inhibitor SulA -
  H3W50_RS02845 sxy/tfoX 590931..591545 (+) 615 WP_038639434.1 TfoX/Sxy family DNA transformation protein Regulator
  H3W50_RS02850 yccS 591523..593676 (-) 2154 WP_038643097.1 YccS family putative transporter -
  H3W50_RS02855 - 593695..594141 (-) 447 WP_038639436.1 YccF domain-containing protein -
  H3W50_RS02860 helD 594267..596321 (+) 2055 WP_038639439.1 DNA helicase IV -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23240.74 Da        Isoelectric Point: 8.9204

>NTDB_id=476183 H3W50_RS02845 WP_038639434.1 590931..591545(+) (sxy/tfoX) [Citrobacter cronae strain S175-1]
MKELSYAKIYKSQEYLASLGTIHYRSLFGSYSLTVGDTVFAMVANGELYLRACEQSVQYCVKNSPVWLTFIKRGRPVVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTLRTLGAQMCWLKLRQNN
PALTVKILYALEGAVSGMHEAALPAVRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=476183 H3W50_RS02845 WP_038639434.1 590931..591545(+) (sxy/tfoX) [Citrobacter cronae strain S175-1]
ATGAAAGAACTTTCTTATGCAAAGATCTATAAATCACAAGAATATCTGGCGTCTCTGGGAACAATTCACTATCGCTCATT
ATTTGGCAGTTACAGTCTGACGGTTGGGGATACGGTCTTTGCTATGGTCGCCAACGGTGAGTTATATCTTCGGGCCTGCG
AACAGAGCGTACAGTACTGTGTAAAAAATTCGCCTGTCTGGCTGACATTTATAAAGCGCGGGCGTCCGGTGGTACTCAAC
TACTATCAGGTGAATGATGCGCTGTGGCAAAACCAGCAGCAGTTGGTGTCGTTATCGCGGTACTCATTGGATGCTGCTGT
TAAGGAAAAACAGAGTCGCTTTGCTCAACATCGTCTGCGGGAACTACCAAATATGACGTTTCATCTGGAGACCCTGCTAA
ATGAAGCAGGGATTAAAGATGAGGGAACATTGCGAACGTTGGGCGCCCAAATGTGCTGGCTGAAACTGCGGCAAAACAAT
CCAGCCCTGACGGTAAAAATACTTTATGCCCTTGAAGGTGCGGTCAGTGGCATGCATGAAGCTGCGCTCCCGGCGGTCCG
TCGCCAGGAGCTGGTGGAGTGGGTCAGTTCTCTTACGCCGGAGCCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686