Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   JYA70_RS02825 Genome accession   NZ_CP071102
Coordinates   527188..527814 (-) Length   208 a.a.
NCBI ID   WP_064126230.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CI/BAC/25/13/W     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 522188..532814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYA70_RS02805 (JYA70_000561) - 522761..523447 (+) 687 WP_000362220.1 DnaD domain-containing protein -
  JYA70_RS02810 (JYA70_000562) nth 523437..524096 (+) 660 WP_000253765.1 endonuclease III -
  JYA70_RS02815 (JYA70_000563) - 524101..524442 (+) 342 WP_000182031.1 YpoC family protein -
  JYA70_RS02820 (JYA70_000564) - 525008..527191 (-) 2184 WP_000138351.1 transglycosylase domain-containing protein -
  JYA70_RS02825 (JYA70_000565) recU 527188..527814 (-) 627 WP_064126230.1 Holliday junction resolvase RecU Machinery gene
  JYA70_RS02830 (JYA70_000566) - 528120..528299 (+) 180 WP_001788819.1 hypothetical protein -
  JYA70_RS02835 (JYA70_000567) - 528354..528704 (+) 351 WP_001000805.1 YppE family protein -
  JYA70_RS02840 (JYA70_000568) - 528697..529260 (+) 564 WP_000241308.1 DUF1273 domain-containing protein -
  JYA70_RS02845 (JYA70_000569) gpsB 529274..529618 (+) 345 WP_001286320.1 cell division regulator GpsB -
  JYA70_RS02855 (JYA70_000571) - 530269..531414 (+) 1146 WP_000487150.1 class I SAM-dependent RNA methyltransferase -
  JYA70_RS02860 (JYA70_000572) - 531498..531830 (+) 333 WP_000516795.1 DUF4889 domain-containing protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24477.83 Da        Isoelectric Point: 9.7084

>NTDB_id=476174 JYA70_RS02825 WP_064126230.1 527188..527814(-) (recU) [Staphylococcus aureus strain CI/BAC/25/13/W]
MNYPNGKPYRKNSAIDGGKKTAAFSNIEYGGRGMSLEKDIEHSNTFYLKSDIAVIHKKPTPVQIVNVNYPKRSKAVINEA
YFRTPSTTDYNGVYQGYYIDFEAKETKNKTSFPLNNIHDHQVEHMKNAYQQKGIVFLMIRFKTLDEVYLFPYSKFEVFWK
RYKDNIKKSITVDEIRKNGYHIPYQYQPRLDYLKAVDKLILDESEDRV

Nucleotide


Download         Length: 627 bp        

>NTDB_id=476174 JYA70_RS02825 WP_064126230.1 527188..527814(-) (recU) [Staphylococcus aureus strain CI/BAC/25/13/W]
ATGAATTATCCAAATGGTAAACCATATCGTAAAAATAGTGCTATAGACGGAGGGAAAAAGACCGCTGCCTTTAGTAATAT
TGAGTATGGTGGACGTGGTATGTCACTTGAAAAAGATATCGAACATTCAAATACGTTTTATCTTAAAAGCGACATTGCAG
TTATTCACAAAAAGCCTACGCCAGTACAAATAGTTAATGTCAACTATCCTAAGCGGAGTAAAGCTGTGATTAACGAAGCT
TATTTTCGTACACCTTCAACAACTGATTACAACGGCGTTTATCAAGGTTATTATATTGATTTTGAAGCAAAGGAAACTAA
AAACAAGACGTCCTTTCCTTTAAATAATATTCATGACCATCAAGTCGAACATATGAAAAATGCATATCAACAAAAAGGTA
TTGTGTTTTTAATGATTCGTTTTAAAACGCTAGATGAAGTTTATCTTTTCCCCTATTCAAAATTCGAAGTATTTTGGAAG
AGATATAAAGATAATATTAAAAAGTCTATAACAGTTGATGAAATACGAAAAAATGGTTACCATATTCCTTATCAGTATCA
ACCAAGATTAGACTATCTAAAAGCAGTTGATAAGTTGATATTAGATGAAAGTGAGGACCGCGTATGA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(32-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

52.657

99.519

0.524