Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   JY392_RS15120 Genome accession   NZ_CP071073
Coordinates   3059925..3061352 (+) Length   475 a.a.
NCBI ID   WP_000980626.1    Uniprot ID   -
Organism   Escherichia coli strain 3347558     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3054925..3066352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JY392_RS15090 (JY392_15085) pduU 3055301..3055651 (+) 351 WP_000211397.1 propanediol utilization microcompartment protein PduU -
  JY392_RS15095 (JY392_15090) - 3055656..3056099 (+) 444 WP_001189433.1 EutP/PduV family microcompartment system protein -
  JY392_RS15100 (JY392_15095) tmaR 3056200..3056529 (-) 330 WP_000450409.1 DUF496 family protein -
  JY392_RS15105 (JY392_15100) yeeA 3056701..3057759 (-) 1059 WP_001200877.1 FUSC family protein -
  JY392_RS15110 (JY392_15105) sbmC 3057958..3058431 (-) 474 WP_001105380.1 DNA gyrase inhibitor SbmC -
  JY392_RS15115 (JY392_15110) dacD 3058550..3059716 (-) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  JY392_RS15120 (JY392_15115) sbcB 3059925..3061352 (+) 1428 WP_000980626.1 exodeoxyribonuclease I Machinery gene
  JY392_RS15125 (JY392_15120) plaP 3061427..3062785 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  JY392_RS15130 (JY392_15125) yoeI 3062775..3062837 (-) 63 WP_010723108.1 membrane protein YoeI -
  JY392_RS15135 (JY392_15130) yeeY 3063052..3063981 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  JY392_RS15140 (JY392_15135) yeeZ 3064027..3064851 (-) 825 WP_000754737.1 SDR family oxidoreductase -
  JY392_RS15145 (JY392_15140) hisL 3065278..3065328 (+) 51 WP_001364200.1 his operon leader peptide -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54532.81 Da        Isoelectric Point: 5.4700

>NTDB_id=476016 JY392_RS15120 WP_000980626.1 3059925..3061352(+) (sbcB) [Escherichia coli strain 3347558]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATISMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVTLLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=476016 JY392_RS15120 WP_000980626.1 3059925..3061352(+) (sbcB) [Escherichia coli strain 3347558]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCACACGATGCGATGGCTGATGT
GTACGCCACTATTTCGATGGCAAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTAGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTCTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAACTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCT
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGTTATGCTGATGAATTGCAGATGCTGGTACAACAAT
ATGCCGATGACAAAGAGAAAGTGACGCTGTTAAAAGCACTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583