Detailed information NTG0476002

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: H8P15_RS17570
• Genome accession: NZ_CP060420
• Coordinates: 3581746..3582891 (+)
• Length: 381 a.a.
• NCBI ID: WP_074534220.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain J17-4
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3576746..3587891

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H8P15_RS17550 (H8P15_17550)	-	3577643..3578071 (-)	429	WP_032869448.1	DUF1934 domain-containing protein	-
H8P15_RS17555 (H8P15_17555)	-	3578225..3578737 (+)	513	Protein_3430	bacteriocin biosynthesis protein AlbG	-
H8P15_RS17560 (H8P15_17560)	-	3578744..3580120 (-)	1377	WP_032875890.1	YncE family protein	-
H8P15_RS17565 (H8P15_17565)	-	3580160..3581515 (-)	1356	WP_032875887.1	YncE family protein	-
H8P15_RS17570 (H8P15_17570)	rapF	3581746..3582891 (+)	1146	WP_074534220.1	Rap family tetratricopeptide repeat protein	Regulator
H8P15_RS17575 (H8P15_17575)	-	3582875..3582994 (+)	120	WP_017418707.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
H8P15_RS17580 (H8P15_17580)	speB	3583117..3583989 (-)	873	WP_032875884.1	agmatinase	-
H8P15_RS17585 (H8P15_17585)	speE	3584048..3584878 (-)	831	WP_003151052.1	spermidine synthase	-
H8P15_RS17590 (H8P15_17590)	-	3585078..3587150 (+)	2073	WP_032875881.1	transglycosylase domain-containing protein	-
H8P15_RS17595 (H8P15_17595)	-	3587175..3587608 (-)	434	Protein_3438	hypothetical protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45737.21 Da
• Isoelectric Point: 5.0614

>NTDB_id=476002 H8P15_RS17570 WP_074534220.1 3581746..3582891(+) (rapF) [Bacillus velezensis strain J17-4]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVKDHIEKAEFYFKMSEVYYYMKQTYVS
MDYARQAYLIYKDAEKYNIRLTQCHSLFGANYLDVKQYDHAISHFQKAYTMAELEQQPQLMGRTLFNIALCHNNQNNKVE
AIPHLKEAIAVFEKAQMSHSLPQPYFLLTQIYFKLKNIDNAYDYHKKGISICKEIDDIIYEEKFKFLEYLYMPDPRDTLI
NDCLHFLENKLMYADIEELALDVAKYYYTQEEYKKASVYFLKVEEARQQIEGGVNLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=476002 H8P15_RS17570 WP_074534220.1 3581746..3582891(+) (rapF) [Bacillus velezensis strain J17-4]
GTGGCGAGTGTTTTATCATCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGTCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGTCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAAAGCAAACTGACGTACG
TTAAAGATCATATAGAAAAAGCTGAATTTTACTTTAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTATCG
ATGGATTATGCGCGGCAGGCTTATTTAATTTATAAAGATGCAGAAAAATATAATATTAGATTAACCCAGTGCCATTCTTT
ATTTGGGGCTAATTATCTTGATGTAAAGCAATACGATCACGCGATTTCCCACTTTCAAAAGGCATATACGATGGCTGAAT
TGGAGCAGCAGCCGCAATTAATGGGGAGGACACTTTTTAACATCGCTTTATGCCATAATAATCAAAACAATAAAGTCGAG
GCTATTCCCCATTTAAAAGAAGCCATAGCTGTTTTTGAAAAAGCTCAAATGAGTCATTCACTTCCGCAGCCCTACTTCTT
ACTTACACAGATTTATTTTAAGTTAAAAAATATAGATAACGCGTACGATTATCATAAAAAAGGTATCTCAATATGTAAGG
AAATAGATGATATAATTTACGAGGAAAAATTTAAATTTTTAGAATACTTGTATATGCCGGATCCAAGAGATACATTAATA
AACGATTGTCTGCATTTTCTTGAAAATAAATTGATGTATGCTGATATTGAGGAATTAGCCCTTGATGTAGCTAAATATTA
TTACACACAAGAAGAATATAAAAAAGCTTCTGTCTACTTTTTAAAGGTTGAAGAAGCCAGACAGCAGATCGAAGGAGGAG
TGAATTTATATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (188-254)

• Tetratricopeptide repeat (TPR_8) (265-293)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	70.079	100	0.701
rapC	Bacillus subtilis subsp. subtilis str. 168	54.211	99.738	0.541