Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   JHY03_RS31775 Genome accession   NZ_CP071044
Coordinates   7268534..7270954 (-) Length   806 a.a.
NCBI ID   WP_094213203.1    Uniprot ID   -
Organism   Streptomyces sp. CA-256286     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7263534..7275954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHY03_RS31755 (JHY03_64200) - 7264074..7264970 (-) 897 WP_031125108.1 LysR substrate-binding domain-containing protein -
  JHY03_RS31760 (JHY03_64210) - 7265101..7265769 (+) 669 WP_094213201.1 succinate dehydrogenase cytochrome b subunit -
  JHY03_RS31765 (JHY03_64220) - 7265771..7267720 (+) 1950 WP_031125106.1 fumarate reductase/succinate dehydrogenase flavoprotein subunit -
  JHY03_RS31770 (JHY03_64230) - 7267717..7268463 (+) 747 WP_015612905.1 succinate dehydrogenase/fumarate reductase iron-sulfur subunit -
  JHY03_RS31775 (JHY03_64240) uvrA 7268534..7270954 (-) 2421 WP_094213203.1 excinuclease ABC subunit UvrA Machinery gene
  JHY03_RS31780 (JHY03_64250) - 7271046..7272056 (-) 1011 WP_164358716.1 MsnO8 family LLM class oxidoreductase -
  JHY03_RS31785 (JHY03_64260) - 7272136..7272624 (+) 489 WP_031125104.1 HAD family acid phosphatase -
  JHY03_RS31790 (JHY03_64270) - 7272625..7272840 (-) 216 WP_018513053.1 dodecin -
  JHY03_RS31795 (JHY03_64280) - 7273044..7274297 (+) 1254 WP_031125103.1 extracellular solute-binding protein -
  JHY03_RS31800 (JHY03_64290) - 7274471..7275289 (+) 819 WP_094213205.1 GNAT family N-acyltransferase -

Sequence

Protein


Download         Length: 806 a.a.        Molecular weight: 85969.96 Da        Isoelectric Point: 6.1881

>NTDB_id=475974 JHY03_RS31775 WP_094213203.1 7268534..7270954(-) (uvrA) [Streptomyces sp. CA-256286]
MHSPHDPYVRVRGAREHNLQDVNVDIPRDTLTVFTGVSGSGKSSLAFGTIYAEAQRRYFESVAPYARRLIHQVGAPAVGE
ITGLPPAVSLEQRRSAPGARSSVGTVTTLSNSLRMLFSRAGDYPAGAERLDSDAFSPNTAAGACPECHGLGRIHRTDEEL
LVPDPSLSIRDGAIAAWPGAWQGKNLRDVLDTLGYDVDRPWRELAAEDREWILFTDEQPVVTVHPVRDAGRIQRPYQGTY
MSARRYVLHTFADTKSRTLRAKAERFLTSAPCPVCGGSRLRPEAMAVTFAGRTIAELAALPLSELAEVLSGAGAGGEETA
RVLTADLLARIGTVTELGLGYLSVDRTAPTLSSGELQRLRLATQLRSGLFGVVYVLDEPSAGLHPADTESLLAVLGRLKE
AGNSVFVVEHQMDVVRRADWLVDVGPLAGEHGGRVLHSGPPEGLAEVPESATRRFLFPEKDEPAPVREPRTPSGWIRLSG
VDRHNVRGVDAAFPLGVFTAVTGVSGSGKSTLVGQVLAGVPADRQAGAEAGAGEQFCAEATGLDAVDRLVQVDQKPIGRT
PRSNLATYTGLFDTVRKLFTQTDTARERGYTAGRFSFNVSGGRCETCQGEGFVSVELLFLPSTYAPCPDCHGARYNPETL
EVTLRGLTVAQVLDLTVESAAGFFAGTPAAERALATLLDVGLGYLRLGQPATELSGGEAQRIKLASELQRTRRGHTLYLL
DEPTTGLHPADVEVLMRQLHGLVDAHNTVVVVEHDMAVVAGADHVIDLGPGGGDRGGRIVATGTPQEVARAAESRTAPYL
AKALGS

Nucleotide


Download         Length: 2421 bp        

>NTDB_id=475974 JHY03_RS31775 WP_094213203.1 7268534..7270954(-) (uvrA) [Streptomyces sp. CA-256286]
ATGCACTCCCCCCACGATCCGTACGTCCGGGTGCGCGGCGCGCGCGAGCACAACCTCCAGGACGTGAACGTCGACATCCC
GCGCGACACCCTCACGGTCTTCACCGGGGTCTCCGGGTCCGGCAAGTCCTCGCTGGCGTTCGGCACGATCTACGCCGAGG
CCCAGCGCCGCTACTTCGAGTCGGTCGCCCCCTACGCGCGCCGGCTCATCCACCAGGTGGGCGCACCCGCCGTCGGGGAG
ATCACCGGGCTGCCGCCCGCGGTCTCCCTGGAGCAGCGGCGCTCCGCACCCGGGGCCCGGTCGTCCGTGGGGACGGTCAC
CACGCTCTCCAACTCGTTGCGGATGCTGTTCTCCCGGGCCGGGGACTACCCGGCGGGGGCCGAGCGGCTCGACTCCGACG
CGTTCTCCCCCAATACGGCGGCCGGGGCCTGCCCCGAGTGCCACGGGCTCGGGCGGATCCACCGGACGGACGAGGAGCTG
CTCGTACCCGACCCCTCACTCTCTATCCGGGACGGCGCGATCGCCGCCTGGCCGGGGGCCTGGCAGGGGAAGAATCTGCG
CGATGTGCTGGACACCCTGGGGTACGACGTCGACCGGCCGTGGCGCGAGCTGGCGGCGGAGGACCGGGAGTGGATCCTCT
TCACCGACGAGCAGCCGGTGGTGACGGTGCATCCCGTGCGGGACGCGGGCCGGATCCAACGCCCTTACCAGGGAACGTAC
ATGAGCGCCCGGCGCTATGTGCTCCACACCTTCGCCGACACGAAGAGCCGGACACTGCGGGCGAAGGCCGAGCGATTCCT
GACCAGTGCGCCGTGCCCGGTGTGCGGCGGCAGTCGGCTGCGGCCGGAGGCGATGGCGGTGACCTTCGCCGGGCGGACCA
TCGCGGAGCTGGCCGCGCTACCCCTCTCCGAGCTGGCCGAGGTGCTCTCCGGCGCCGGGGCCGGCGGTGAGGAGACGGCC
CGGGTGCTGACGGCCGATCTGCTGGCCCGGATCGGCACGGTGACGGAGCTGGGGCTCGGGTATCTGAGCGTGGACCGTAC
GGCCCCGACGCTCTCCTCGGGCGAGTTGCAGCGGCTGCGGCTGGCGACCCAGCTGCGTTCGGGGCTCTTCGGGGTCGTCT
ACGTACTGGACGAGCCGTCGGCCGGGCTGCACCCCGCCGATACGGAGTCCCTGCTCGCGGTGCTCGGCCGGCTGAAGGAG
GCCGGGAACTCGGTCTTCGTGGTGGAGCACCAGATGGATGTGGTGCGGCGGGCGGACTGGCTGGTGGACGTGGGGCCGCT
GGCCGGGGAGCACGGCGGGCGGGTGCTGCACAGCGGGCCGCCGGAGGGACTGGCCGAGGTGCCGGAGTCGGCGACGCGGC
GGTTCCTGTTCCCGGAGAAGGACGAGCCCGCGCCGGTACGGGAGCCGCGCACCCCTTCCGGGTGGATCCGGCTCTCCGGC
GTGGACCGCCACAACGTGCGCGGGGTCGACGCGGCCTTCCCGCTCGGGGTGTTCACGGCGGTGACCGGTGTGTCCGGGTC
GGGCAAGTCGACCCTGGTGGGGCAGGTGCTCGCAGGGGTGCCGGCGGACCGGCAGGCCGGCGCGGAGGCCGGGGCGGGCG
AGCAGTTCTGCGCCGAGGCCACCGGGCTCGACGCGGTGGACCGGCTCGTCCAGGTCGACCAGAAGCCGATCGGGCGGACG
CCCCGGTCCAACCTGGCCACGTACACCGGGCTGTTCGACACCGTACGGAAGCTCTTCACGCAGACGGATACCGCGCGGGA
GCGGGGCTACACGGCGGGGCGGTTCTCGTTCAACGTGAGCGGCGGGCGGTGCGAGACCTGCCAGGGCGAGGGATTCGTCT
CGGTGGAGCTGCTCTTCCTGCCCAGCACGTACGCGCCCTGCCCGGACTGCCACGGCGCGCGCTACAACCCGGAGACGCTT
GAGGTCACGCTGCGCGGGCTGACGGTCGCCCAGGTCCTCGATCTCACCGTGGAGTCGGCGGCGGGCTTCTTCGCCGGGAC
CCCGGCCGCCGAGCGTGCGCTGGCCACCCTGCTGGACGTGGGGCTCGGCTATCTGCGGCTCGGGCAGCCCGCCACGGAGC
TGTCCGGCGGGGAGGCCCAGCGGATCAAGCTCGCCTCCGAACTCCAGCGCACCCGGCGCGGGCACACCCTGTATCTGCTG
GACGAGCCGACGACCGGCCTGCATCCGGCCGATGTGGAGGTGCTGATGCGGCAGTTGCACGGTCTGGTGGACGCGCACAA
CACGGTGGTGGTCGTGGAGCACGACATGGCCGTGGTGGCGGGCGCCGACCATGTGATCGACCTGGGGCCCGGCGGCGGGG
ACCGGGGCGGCCGTATCGTGGCGACCGGTACGCCCCAGGAGGTCGCGCGGGCGGCGGAGAGCCGCACCGCGCCCTATCTG
GCGAAGGCGCTGGGGAGTTGA

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(157-265)

ABC transporter (ABC_tran)

(488-724)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

43.695

84.615

0.37
  uvrA Streptococcus pneumoniae TIGR4

43.695

84.615

0.37
  uvrA Streptococcus pneumoniae D39

43.695

84.615

0.37