Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   JHY03_RS16975 Genome accession   NZ_CP071044
Coordinates   3867960..3869090 (-) Length   376 a.a.
NCBI ID   WP_031122533.1    Uniprot ID   A0A6N9VKH1
Organism   Streptomyces sp. CA-256286     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3862960..3874090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHY03_RS16965 (JHY03_34200) gyrB 3864845..3866914 (-) 2070 WP_031122531.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  JHY03_RS16970 (JHY03_34210) - 3867325..3867963 (-) 639 WP_242743952.1 DciA family protein -
  JHY03_RS16975 (JHY03_34220) recF 3867960..3869090 (-) 1131 WP_031122533.1 DNA replication/repair protein RecF Machinery gene
  JHY03_RS16980 (JHY03_34230) gnd 3869156..3870040 (-) 885 WP_031122534.1 decarboxylating 6-phosphogluconate dehydrogenase -
  JHY03_RS16985 (JHY03_34240) dnaN 3870211..3871341 (-) 1131 WP_015609839.1 DNA polymerase III subunit beta -
  JHY03_RS16990 (JHY03_34250) dnaA 3872258..3874084 (-) 1827 WP_079035928.1 chromosomal replication initiator protein DnaA -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 40808.40 Da        Isoelectric Point: 6.8624

>NTDB_id=475940 JHY03_RS16975 WP_031122533.1 3867960..3869090(-) (recF) [Streptomyces sp. CA-256286]
MHVTHLSLADFRSYARVEVPLGPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVSSDAPLVRMGAERAVIRAAVTQGERS
QLIELELNPGRANRARINRSSQVRPRDVLGIVRTVLFAPEDLALVKGDPGERRRFLDELITARSPRMAGVRSDYERVLKQ
RNTLLKSAAMARRHGGRSLDLSTLDVWDEHLGRVGAELLAQRLDLIATLQPLADKAYGDVAPGGGPVTLEYRSSVGEDID
PGRTREELYEQLTAALVGARKQEIERGVTLVGPHRDDLVLGLRSMPAKGYASHGESWSYALALRLASYELLRAEGNEPVL
VLDDVFAELDARRRERLAELVAPGEQVLVTAAVAEDVPGALAGARYTVSAGEVERV

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=475940 JHY03_RS16975 WP_031122533.1 3867960..3869090(-) (recF) [Streptomyces sp. CA-256286]
ATGCACGTCACCCATCTCTCGCTGGCCGACTTCCGCTCGTACGCCCGGGTCGAGGTTCCTCTCGGCCCGGGCGTCACCGC
GTTCGTGGGGCCCAACGGGCAGGGCAAGACCAATCTCGTCGAGGCGGTCGGCTATCTCGCCACCCTCGGCAGCCACCGGG
TCTCCTCGGACGCCCCCCTGGTGCGGATGGGCGCCGAGCGGGCCGTGATCCGGGCGGCGGTGACCCAGGGCGAACGCTCG
CAGCTGATCGAGCTGGAGCTCAACCCCGGCCGCGCCAACCGGGCCCGTATCAACCGGTCCTCGCAGGTCAGACCGCGTGA
CGTACTCGGGATCGTACGCACCGTGCTGTTCGCGCCGGAGGACCTGGCGCTGGTCAAGGGCGACCCCGGTGAGCGGCGGC
GGTTCCTGGACGAGCTGATCACCGCCCGTTCGCCCCGGATGGCCGGGGTCCGCTCCGACTACGAGCGGGTGCTCAAGCAG
CGCAACACCTTGCTGAAGTCCGCAGCCATGGCCCGCCGGCACGGCGGCCGGTCCCTGGACCTGTCCACCCTCGACGTCTG
GGACGAGCACCTGGGCCGGGTCGGTGCCGAGCTGCTCGCGCAGCGCCTGGACCTGATCGCCACGCTCCAGCCGCTGGCCG
ACAAGGCGTACGGGGACGTGGCGCCGGGCGGCGGCCCCGTAACGCTCGAGTACCGCAGCTCGGTGGGCGAGGACATCGAT
CCCGGGCGCACCCGCGAGGAGCTGTACGAGCAGTTGACCGCGGCGCTCGTCGGGGCCCGCAAGCAGGAGATCGAGCGCGG
GGTGACGCTGGTGGGCCCGCACCGGGACGATCTGGTGCTCGGCCTGCGGTCCATGCCCGCGAAGGGGTACGCGAGCCACG
GGGAGTCCTGGAGTTACGCGCTGGCGCTGCGGCTGGCCAGTTACGAGCTGCTGCGCGCCGAGGGCAACGAGCCGGTGCTG
GTCCTGGACGACGTCTTCGCCGAGCTGGACGCCCGTCGCCGGGAGCGGCTGGCGGAGCTGGTGGCCCCGGGCGAGCAGGT
GCTGGTGACGGCCGCGGTGGCGGAGGACGTCCCGGGCGCGCTGGCGGGGGCGCGGTACACGGTGTCGGCGGGCGAGGTGG
AGCGGGTATGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-352)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N9VKH1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.705

97.34

0.367